Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01075 ATGGTGCGAGGCAAGACTGAAATGAAGCGCATAGAGAATGCCACAAGCCGGCAAGTCACGTTTTCAAAGCGCAGAAATGGACTGCTGAAGAAAGCCTTTGAGCTATCAGTTCTGTGCGATGCTGAAGTTGCCCTTATAATCTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTTCAGTATGAACAAAACAATTGATCGTTATCAGAACAGGACCAAAGATTTGATGTCGAGTAACAACACAGCTGTTGAAGATTTGCAGTTGGAGAAGGAACTCGACTCGTTTACCATCACTAAGAAGTTGGAGCACCTTGAAGTTAGTAAAAGAAAACTGTTGGGAGGTGGGTTGGATTCGTGCTCGATCGACGAGTTGCAGCAGCTCGAAAGACAGCTTGAAAGAAGCTTAAGCAAGATTAGGTCAAGAAAGTATCAAATTTTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAACTGTTGCTGGAAGAAAATGCAGCACTGCAGGTGAAGGTCGGAAGAGAATCGTCAAAGAAACGAGAAACGAAGCAGAGATCAGAATCAAAGGAGCAAGACATAATGGATGTGGAAACTGAACTGTTCATAGGACTCCCAGAAAGAAGAACAACCACCAATGGCTTCCTCTAG 648 42.9 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNFSMNKTIDRYQNRTKDLMSSNNTAVEDLQLEKELDSFTITKKLEHLEVSKRKLLGGGLDSCSIDELQQLERQLERSLSKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVKVGRESSKKRETKQRSESKEQDIMDVETELFIGLPERRTTTNGFL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8437266 8441205 - Carg16667-RA Car15g01075 162912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01075 215 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car15g01075 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car15g01075 215 MobiDBLite consensus disorder prediction 173 191 - -
Car15g01075 215 Coils Coil 122 142 - -
Car15g01075 215 Pfam K-box region 97 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car15g01075 215 Coils Coil 144 171 - -
Car15g01075 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car15g01075 215 MobiDBLite consensus disorder prediction 172 191 - -
Car15g01075 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car15g01075 215 Coils Coil 179 199 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00953 Car15g01075 CCT
Car02g01254 Car15g01075 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00770 Car-Chr2:5617406 Car15g01075 Car-Chr15:8437266 1.41E-15 dispersed
Car02g00771 Car-Chr2:5619098 Car15g01075 Car-Chr15:8437266 1.51E-32 dispersed
Car08g00827 Car-Chr8:5522695 Car15g01075 Car-Chr15:8437266 2.46E-68 dispersed
Car15g01075 Car-Chr15:8437266 Car15g01258 Car-Chr15:9821035 7.56E-61 dispersed
Car14g01800 Car-Chr14:14086186 Car15g01075 Car-Chr15:8437266 1.83E-54 wgd
Car15g01075 Car-Chr15:8437266 Car02g01254 Car-Chr2:8458346 3.00E-97 wgd
Car15g01075 Car-Chr15:8437266 Car06g00953 Car-Chr6:7342139 2.69E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4865 PF01486 K-box 3.20E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01075 - - csv:101220518 315.079