Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01077 ATGTGTCAGGAGGTGTTGCAGAAAGTTTTGTCTCGGATCCCTATATACTCCTCTCTTTCTCTCTCTTCTTCTTCTTCATTTCACTCCATTAACGACAAACTGTCTCTTATTCATCATCAAATTCGATCAAAATTGAATCCCAACAATTTCCACTATCGATCTCACCTCGCGGCTTCTGTTCTTTCTAATTACTGTTGTTTTTGTGTTAATTTTACTCTACTGCGGGTTTTGTGGGGGTTTGAAATGCAAGAAGCTGGGTTGGGAATCATGAATGCTGGTGCGTCTAGCGGTGATGTTTTGGTTTCCGGTGAGGGGGTTCATAATGCCCGACTCAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCCGCTCATGTGGCTTGTCTTCGTGTTGCTACGCCGATTGATAAGCTTCCGATGATCGATGCTCAGCTTTCTCAATCGCATCATGTTTTGCGCTCTTATGCTTCTTCTCATCAAAATGCTCATTCCTTGTCGCCTCATGACCGCCAGGAACTCGATAATTTTCTGGCTCAGTATATGATCGTTTTGTGCTCTTTCAAAGATCAGCTTCAACAGCATGTGAGATTTCACGCAGTGGAGGCTGATGACGTTCCAATGGACTTCTCACTCGATCAATCTAGCACTGATGCACACGACATGATGGGGTTCGGACCGCTGCTTCCGACCGAATCCGAAAGGTCGCTAATGGAGAGGGTTCGACAAGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCAGGGAAGCTACCTGGGGATACAACTACAGTTTTGAAGAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGACAAGTCGAAGCTGGTGGAGGAGACGGGTTTACAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACACTCAGTCAGTGACATTCTTGAAGTCCAAGCGCAAGAGATAA 1032 44.77 MCQEVLQKVLSRIPIYSSLSLSSSSSFHSINDKLSLIHHQIRSKLNPNNFHYRSHLAASVLSNYCCFCVNFTLLRVLWGFEMQEAGLGIMNAGASSGDVLVSGEGVHNARLKAEIATHPLYEQLLSAHVACLRVATPIDKLPMIDAQLSQSHHVLRSYASSHQNAHSLSPHDRQELDNFLAQYMIVLCSFKDQLQQHVRFHAVEADDVPMDFSLDQSSTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKSKLVEETGLQLKQINNWFINQRKRNWHSNTQSVTFLKSKRKR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8459115 8469596 + Carg16665-RA Car15g01077 162914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01077 343 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677
Car15g01077 343 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677
Car15g01077 343 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677|GO:0006355
Car15g01077 343 Pfam KNOX1 domain 111 152 IPR005540 GO:0003677|GO:0005634
Car15g01077 343 Pfam KNOX2 domain 169 205 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01251 Car15g01077 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00310 Car-Chr5:1707821 Car15g01077 Car-Chr15:8459115 1.08E-109 dispersed
Car09g00379 Car-Chr9:2088126 Car15g01077 Car-Chr15:8459115 2.15E-102 dispersed
Car12g00335 Car-Chr12:2114504 Car15g01077 Car-Chr15:8459115 2.90E-76 dispersed
Car15g01077 Car-Chr15:8459115 Car05g00025 Car-Chr5:135513 1.26E-25 dispersed
Car02g01251 Car-Chr2:8444055 Car15g01077 Car-Chr15:8459115 9.51E-70 transposed
Car15g01077 Car-Chr15:8459115 Car02g01250 Car-Chr2:8441825 3.22E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4866 PF03790 KNOX1 1.30E-17 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01077 - - csv:101206054 471.085