Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01083 ATGAAAAACGAAGATCAAGCGAGGTCCCTGTTTGGGATTTCGCTCACTGATCGACCCAAATGGCAGCAGTTTCTCATTTGCTCTTCTGGGTTTTTCTTTGGCTACCTTGTTAATGGCGTTTGCGAGGAATATGTGTATAATCGTCTTAAATTCAGTTATGGATGGTACTTCACATTTGTGCAAGGCTTTGTTTATCTGGCTCTCATTTATCTCCAAGGGTTCACAACCAAGCAAATGGTTAACCCATGGAAGACATATGTGAAGCTCTCAGCTGTTCTTATGGGATCTCATGGCTTAACCAAAGGATCCTTGGCTTTTCTGAATTATCCAGCACAAATTATGTTCAAATCTACCAAGGTGCTTCCTGTTATGATAATGGGAGCCTTCATTCCTGGGTTGAGAAGGAAATACCCTCTTCATGAGTATATCTCTGCTCTTCTGTTAGTGATTGGATTGATTCTCTTCACCTTAGCAGATGCACAGACTTCTCCAAATTTCAGTATATTTGGTGTTGTTATGATAAGCGGCGCTCTTGTTATGGACGCCTTTCTTGGAAATTTGCAGGAAGCCATTTTTACTATGAATCCTGATACTACACAGACCGAGATGTTGTTTTGCTCAACCGTAGTTGGCCTCCCTTTCTTAGTAGTACCGATGGTGCTAACGGGCGAGCTATTTCGTGCCTGGACTTCCTGTGCTGAACACCCGTATGTCTACGGAGTCTTGGTGTTCGAAGCCATGGCGACGTTCGTTGGGCAAGTGTCAGTTCTGTCTCTAATCGCCATTTTTGGCGCTGCCACAACCGCAATGATAACAACAGCAAGAAAAGCAGTGACTCTTCTACTTTCATACCTGATATTCACCAAGCCAATGACAGAACAGCATGGGAGTGGGCTGCTGCTTATAGCCATGGGAATTGTACTGAAGATGTTACCTGACAGTAAGTTGCCTTCAAGAACACCAAAATCAGCACACAGAGAAGAAGATGAGAAGGGAAAAACACAAGATGAAGAGAAGAGGCCATTGGTTTTACAATTATTTATATTTATATATAGA 1056 42.71 MKNEDQARSLFGISLTDRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLKFSYGWYFTFVQGFVYLALIYLQGFTTKQMVNPWKTYVKLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPLHEYISALLLVIGLILFTLADAQTSPNFSIFGVVMISGALVMDAFLGNLQEAIFTMNPDTTQTEMLFCSTVVGLPFLVVPMVLTGELFRAWTSCAEHPYVYGVLVFEAMATFVGQVSVLSLIAIFGAATTAMITTARKAVTLLLSYLIFTKPMTEQHGSGLLLIAMGIVLKMLPDSKLPSRTPKSAHREEDEKGKTQDEEKRPLVLQLFIFIYR 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8505185 8507346 - Carg16659-RA Car15g01083 162920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01083 352 Pfam UAA transporter family 23 311 IPR013657 GO:0055085
Car15g01083 352 MobiDBLite consensus disorder prediction 317 337 - -
Car15g01083 352 MobiDBLite consensus disorder prediction 319 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01083 K15277 SLC35B3, PAPST2; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 - csv:101204857 641.343
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00949 Car15g01083 CCT
Car06g00949 Car15g01083 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01681 Car-Chr4:9660366 Car15g01083 Car-Chr15:8505185 1.04E-13 dispersed
Car15g01083 Car-Chr15:8505185 Car18g01076 Car-Chr18:10921252 3.88E-17 dispersed
Car14g01804 Car-Chr14:14108817 Car15g01083 Car-Chr15:8505185 0 wgd
Car15g01083 Car-Chr15:8505185 Car06g00949 Car-Chr6:7317109 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g405 . . . . . . . Bma14g00580 Cmo06g01139 . . Cma15g01195 . Car15g01083 . . . . . . . . . . . . . . . . . Cone8ag0332 Cone12ag0329 . . . Csa05g00327 Chy09g01182 . . . Bda07g00499 . . Bpe11g00688 . . . . Cmo15g01259 Cma06g01112 . Car06g00949 . Cpe08g00505 Cpe13g00179 Bhi12g00199 . . . . . Lcy12g1706 . . . . . . . Lsi09g00313 . . Cme09g01715
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001533 3 4 2 2 2 2 3 2 1 2 1 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 6 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01083 Car_Chr15 FPKM 25.587042 28.673603 18.420033 17.041645 34.307049 35.469334 37.181557 19.690638 18.888945 17.946566