Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car15g01085 | ATGGGTGACCAAAAGCTCCCAATGAACCAGCTGAGCCAAACACCCATTGACCCTCTTGTTCCTTCTGTCCCCACATCCCAAAATCCTAATCCAAATCCAAATCCAAACACCCAAGTGGCTGAACCACGAGCTTTGGTTCAAGAACTGCCGCCGCCGCCGCCGCCACCACCACCATCATCCATGGCTTCTTCAATTACTTCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGGTGCCGGAGCGGCAAATGGGTGTCGGAGATTCGAGAGCCACGTAAGACGAAGCGGATATGGCTCGGTACATTTCCGACGCCTGAGATGGCTGCTGCTGCTTACGACGTCGCTGCACTTGCTCTTCGAGGTGACGACGCTGTCCTTAACTTCCCTGCCTCCATTCCCTCCTACCCTATTCCTGCCTCAACTTCTCCTATCGATATACGCGCTGCTGCTTCTACTGCTGCTGCTGCTTCCGCTGCTAATACGTTGAAGAAAGTTGAAGGCGCTTGTAGTAATATTGATGATACAAAGATTATTACGGTTGAAGATTGTAGCAATACGACGTTGTTGAAAACGGAGGAGTTTGTGGATGAAGAAGAGATTTTTGGTATGCCGAGTTTGCTGGCTGATATGGCTGAGGGGATGATGGTGTCGCCGCCGAGAATAAACTCGCCGCCACCGTCCGATGACTCAATCGAGAATTCAGATGGAACAGAAAGCTTATGGAGCTACTTTTTTGATTTGCGGTATACTTTTTTTGGTCTATTCATTGGTTGTAACTATGATCTGATACTGGCGTCGAACCAGCCCAAGCGCCCGGCGGGTCGGCGGGTTTTTAAAGAGACGAGGCATCCGGTCTACAGAGGAGTACGTCGGAGGAATAACGACAAATGGGTTTGTGAGATGAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCTGAGATGGCGGCGCGTGCACACGATGTGGCTGCACTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTTGCTGACTCGGCGTGGCGGTTTCCGATTCCGGCTAGTGATGACCCGTCTGTGATCCGAGCGGCAGCAGCGATGGCGGCGAATGAATGCAAGGATGAGGAATGTAATGCGTGTCGGGAAGAGGACGACGTCGTTTTGTGTCAACCCACGGCGAGTCCTGACCAGCCGGTTTATGTCGACGATGAGGCTTTGTCGAATATGCCAATGTTGCTTGCCAACATGGCGGAAGGACTTCTTCTTTCTCCTCCGTCTTTTTGTGTAAATGATGACGTGGAGTGGGATGATGTGGCCATGAGTCATGACGTGTCATTGTGGAACTTTTAG | 1353 | 51.0 | MGDQKLPMNQLSQTPIDPLVPSVPTSQNPNPNPNPNTQVAEPRALVQELPPPPPPPPPSSMASSITSSSSTKKHSLYRGIRCRSGKWVSEIREPRKTKRIWLGTFPTPEMAAAAYDVAALALRGDDAVLNFPASIPSYPIPASTSPIDIRAAASTAAAASAANTLKKVEGACSNIDDTKIITVEDCSNTTLLKTEEFVDEEEIFGMPSLLADMAEGMMVSPPRINSPPPSDDSIENSDGTESLWSYFFDLRYTFFGLFIGCNYDLILASNQPKRPAGRRVFKETRHPVYRGVRRRNNDKWVCEMREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAAMAANECKDEECNACREEDDVVLCQPTASPDQPVYVDDEALSNMPMLLANMAEGLLLSPPSFCVNDDVEWDDVAMSHDVSLWNF | 450 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8516066 | 8523263 | - | Carg16657-RA | Car15g01085 | 162922 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car15g01085 | 450 | MobiDBLite | consensus disorder prediction | 46 | 61 | - | - | |
Car15g01085 | 450 | Pfam | AP2 domain | 76 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Car15g01085 | 450 | Pfam | AP2 domain | 287 | 337 | IPR001471 | GO:0003700|GO:0006355 | |
Car15g01085 | 450 | ProSiteProfiles | AP2/ERF domain profile. | 76 | 132 | IPR001471 | GO:0003700|GO:0006355 | |
Car15g01085 | 450 | ProSiteProfiles | AP2/ERF domain profile. | 288 | 345 | IPR001471 | GO:0003700|GO:0006355 | |
Car15g01085 | 450 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Car15g01085 | 450 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car02g01244 | Car15g01085 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car02g01244 | Car-Chr2:8412622 | Car15g01085 | Car-Chr15:8516066 | 9.09E-23 | dispersed | |
Car06g00395 | Car-Chr6:2176750 | Car15g01085 | Car-Chr15:8516066 | 1.49E-36 | dispersed | |
Car06g00633 | Car-Chr6:3705144 | Car15g01085 | Car-Chr15:8516066 | 1.74E-34 | dispersed | |
Car15g01085 | Car-Chr15:8516066 | Car16g00962 | Car-Chr16:8019931 | 1.58E-30 | wgd | |
Car15g01085 | Car-Chr15:8516066 | Car16g00132 | Car-Chr16:761641 | 2.22E-34 | wgd | |
Car15g01085 | Car-Chr15:8516066 | Car18g01124 | Car-Chr18:11208387 | 2.90E-23 | wgd | |
Car15g01085 | Car-Chr15:8516066 | Car02g01243 | Car-Chr2:8409741 | 1.10E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4867 | PF00847 | AP2 | 3.10E-14 | CL0081 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car15g01085 | - | - | bhj:120092445 | 335.88 |