Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01085 ATGGGTGACCAAAAGCTCCCAATGAACCAGCTGAGCCAAACACCCATTGACCCTCTTGTTCCTTCTGTCCCCACATCCCAAAATCCTAATCCAAATCCAAATCCAAACACCCAAGTGGCTGAACCACGAGCTTTGGTTCAAGAACTGCCGCCGCCGCCGCCGCCACCACCACCATCATCCATGGCTTCTTCAATTACTTCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGGTGCCGGAGCGGCAAATGGGTGTCGGAGATTCGAGAGCCACGTAAGACGAAGCGGATATGGCTCGGTACATTTCCGACGCCTGAGATGGCTGCTGCTGCTTACGACGTCGCTGCACTTGCTCTTCGAGGTGACGACGCTGTCCTTAACTTCCCTGCCTCCATTCCCTCCTACCCTATTCCTGCCTCAACTTCTCCTATCGATATACGCGCTGCTGCTTCTACTGCTGCTGCTGCTTCCGCTGCTAATACGTTGAAGAAAGTTGAAGGCGCTTGTAGTAATATTGATGATACAAAGATTATTACGGTTGAAGATTGTAGCAATACGACGTTGTTGAAAACGGAGGAGTTTGTGGATGAAGAAGAGATTTTTGGTATGCCGAGTTTGCTGGCTGATATGGCTGAGGGGATGATGGTGTCGCCGCCGAGAATAAACTCGCCGCCACCGTCCGATGACTCAATCGAGAATTCAGATGGAACAGAAAGCTTATGGAGCTACTTTTTTGATTTGCGGTATACTTTTTTTGGTCTATTCATTGGTTGTAACTATGATCTGATACTGGCGTCGAACCAGCCCAAGCGCCCGGCGGGTCGGCGGGTTTTTAAAGAGACGAGGCATCCGGTCTACAGAGGAGTACGTCGGAGGAATAACGACAAATGGGTTTGTGAGATGAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCTGAGATGGCGGCGCGTGCACACGATGTGGCTGCACTCGCGTTGAGAGGGAAGTCGGCTTGTCTCAATTTTGCTGACTCGGCGTGGCGGTTTCCGATTCCGGCTAGTGATGACCCGTCTGTGATCCGAGCGGCAGCAGCGATGGCGGCGAATGAATGCAAGGATGAGGAATGTAATGCGTGTCGGGAAGAGGACGACGTCGTTTTGTGTCAACCCACGGCGAGTCCTGACCAGCCGGTTTATGTCGACGATGAGGCTTTGTCGAATATGCCAATGTTGCTTGCCAACATGGCGGAAGGACTTCTTCTTTCTCCTCCGTCTTTTTGTGTAAATGATGACGTGGAGTGGGATGATGTGGCCATGAGTCATGACGTGTCATTGTGGAACTTTTAG 1353 51.0 MGDQKLPMNQLSQTPIDPLVPSVPTSQNPNPNPNPNTQVAEPRALVQELPPPPPPPPPSSMASSITSSSSTKKHSLYRGIRCRSGKWVSEIREPRKTKRIWLGTFPTPEMAAAAYDVAALALRGDDAVLNFPASIPSYPIPASTSPIDIRAAASTAAAASAANTLKKVEGACSNIDDTKIITVEDCSNTTLLKTEEFVDEEEIFGMPSLLADMAEGMMVSPPRINSPPPSDDSIENSDGTESLWSYFFDLRYTFFGLFIGCNYDLILASNQPKRPAGRRVFKETRHPVYRGVRRRNNDKWVCEMREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPASDDPSVIRAAAAMAANECKDEECNACREEDDVVLCQPTASPDQPVYVDDEALSNMPMLLANMAEGLLLSPPSFCVNDDVEWDDVAMSHDVSLWNF 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8516066 8523263 - Carg16657-RA Car15g01085 162922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01085 450 MobiDBLite consensus disorder prediction 46 61 - -
Car15g01085 450 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Car15g01085 450 Pfam AP2 domain 287 337 IPR001471 GO:0003700|GO:0006355
Car15g01085 450 ProSiteProfiles AP2/ERF domain profile. 76 132 IPR001471 GO:0003700|GO:0006355
Car15g01085 450 ProSiteProfiles AP2/ERF domain profile. 288 345 IPR001471 GO:0003700|GO:0006355
Car15g01085 450 MobiDBLite consensus disorder prediction 1 21 - -
Car15g01085 450 MobiDBLite consensus disorder prediction 1 77 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01244 Car15g01085 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01244 Car-Chr2:8412622 Car15g01085 Car-Chr15:8516066 9.09E-23 dispersed
Car06g00395 Car-Chr6:2176750 Car15g01085 Car-Chr15:8516066 1.49E-36 dispersed
Car06g00633 Car-Chr6:3705144 Car15g01085 Car-Chr15:8516066 1.74E-34 dispersed
Car15g01085 Car-Chr15:8516066 Car16g00962 Car-Chr16:8019931 1.58E-30 wgd
Car15g01085 Car-Chr15:8516066 Car16g00132 Car-Chr16:761641 2.22E-34 wgd
Car15g01085 Car-Chr15:8516066 Car18g01124 Car-Chr18:11208387 2.90E-23 wgd
Car15g01085 Car-Chr15:8516066 Car02g01243 Car-Chr2:8409741 1.10E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4867 PF00847 AP2 3.10E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01085 - - bhj:120092445 335.88