Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01086 ATGTCTGGTTCTGGTTCTGTACTTTCCGACCAGCCAAAGATTCCGACCAATACTACTACTTCGCTTAATGCTCCTCTGATCTCCGAAACAGAGAGATTTCCAAATCTGTGTGTTGTTCTGACAGAGCTCAAATGTATAGCCGACATCGCACTTCCGATGATTCTTGTCGGATTTTTGATGTACTCTCGTTCGATGATATCCATGTTGTTTCTCGGCCGATTGGGTGGTTTGTCCTTGGCTGGTGGTTCGCTTGCGATTGGGTTTGCTAATATTACTGGCTACTCTGTTCTCTCTGGCCTCGCCGTCGGCATGGAGCCCATTTGCGGCCAAGCTTTTGGGGCTAAAAAATTCAAACTTTTGGGCCTTGCCCTTCAAAGAACAGTCATTCTTCTCCTCTTTTCTTCAATACCCATTTCGTTTTTGTGGTTTAACATGAAGAAAATCCTCCTCCTTTGCGGCCAAAACGATGATATTGCCAGTGAAGCTCATTCCTACATACTCTGTTCTGTCCCTGATTTAATTGCTCTGTCTTTTCTCCACCCTTTACGGATTTATCTTCGCAGTCAATCAATTAACCTCCCTCTCACATACTGCGCTGGACTAGCCATTATATTTCATATCCCAATCAATTACCTACTCGTCTCTGTTTTCGATTTGGGAATTTACGGCGTCGCTTTGGGAGCTGTGTGGACCAATTTCAACCTTGTCGGATTACTGATTTTATTCATCGTAGTCTCCGGCGTGTACGAGAAAACCTGGCCGGGAATGTCGTCGGAGTGTTTGAAGGAATGGAAATCGCTACTTGAATTGGCGATTCCGAGCTGTATTTCGGTGTGTTTAGAATGGTGGTGGTATGAAATCATGATTTTGCTAAGTGGGTTCATGATGAATCCTCAATCAACAGTGGCTTCCATGGGGATTCTGATACAAACCACTGCTTTGATCTACATTTTCCCTTCGTCATTAAGCTTCGGAGTATCAACCAGAGTGGGAAACGAATTGGGTGCAAATCGTCCAAACAAAGCCAAATTAGCCGCCATTGTTGGGCTCTGTACAAGCTTCTTCCTTGGGCTATCAGCTTTGGCGTTCGCTTTCAATGTCCGGAAAGTATGGGCGAAAATGTTCACAAATGACACAGGAATCATCGAATTGACATGTCTGGTTCTCCCAATCATCGGACTCTGCGAGCTGGGGAACTGCCCACAGACGACAAGCTGTGGAGTATTGAGGGGCACCGCGCGGCCAAAATTGGGGGCGAACATAAATTTGGGATGTTTTTACTTGGTGGGCATGCCAATTGCTATATGGCTGAGCTTTTACGGCGGGTGGGACTTCAAAGGGCTGTGGATTGGGCTGTTGGCGGCGCAAGTGTCTTGTGCCATAGCGATGCTGATGGCTCTGGTTCGGACCAATTGGGAAGAACAGGCCGAGAGGGCTAAGGAGCTGACTGGAAGTGGGTCGGACGATGATGATGAAAAAACAGAGCTTTTGAATGCGTAG 1500 46.67 MSGSGSVLSDQPKIPTNTTTSLNAPLISETERFPNLCVVLTELKCIADIALPMILVGFLMYSRSMISMLFLGRLGGLSLAGGSLAIGFANITGYSVLSGLAVGMEPICGQAFGAKKFKLLGLALQRTVILLLFSSIPISFLWFNMKKILLLCGQNDDIASEAHSYILCSVPDLIALSFLHPLRIYLRSQSINLPLTYCAGLAIIFHIPINYLLVSVFDLGIYGVALGAVWTNFNLVGLLILFIVVSGVYEKTWPGMSSECLKEWKSLLELAIPSCISVCLEWWWYEIMILLSGFMMNPQSTVASMGILIQTTALIYIFPSSLSFGVSTRVGNELGANRPNKAKLAAIVGLCTSFFLGLSALAFAFNVRKVWAKMFTNDTGIIELTCLVLPIIGLCELGNCPQTTSCGVLRGTARPKLGANINLGCFYLVGMPIAIWLSFYGGWDFKGLWIGLLAAQVSCAIAMLMALVRTNWEEQAERAKELTGSGSDDDDEKTELLNA 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8530961 8532460 + Carg16656-RA Car15g01086 162923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01086 499 MobiDBLite consensus disorder prediction 478 499 - -
Car15g01086 499 Pfam MatE 273 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car15g01086 499 Pfam MatE 52 212 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01086 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101219094 772.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g01086 Car18g01127 CCT
Car15g01086 Car16g00129 CCT
Car15g01086 Car18g01127 ECH
Car15g01086 Car16g00129 ECH
Car02g01242 Car15g01086 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01274 Car-Chr2:8540240 Car15g01086 Car-Chr15:8530961 1.92E-97 dispersed
Car05g00512 Car-Chr5:2989119 Car15g01086 Car-Chr15:8530961 0 dispersed
Car08g01112 Car-Chr8:7545222 Car15g01086 Car-Chr15:8530961 1.85E-153 dispersed
Car12g00207 Car-Chr12:1311924 Car15g01086 Car-Chr15:8530961 0 dispersed
Car16g00366 Car-Chr16:2260505 Car15g01086 Car-Chr15:8530961 4.88E-42 dispersed
Car15g01086 Car-Chr15:8530961 Car16g00129 Car-Chr16:751992 0 wgd
Car15g01086 Car-Chr15:8530961 Car18g01127 Car-Chr18:11222439 0 wgd
Car15g01086 Car-Chr15:8530961 Car02g01242 Car-Chr2:8404265 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g400 . . . . . . . . . . Cma02g01482 Cma15g01199 Car02g01242 Car15g01086 . . Cpe05g00307 . . . . . . . . . . . . . . Cone8ag0330 . Cone6ag0749 Cone9ag0752 . Csa05g00322 . . Blo03g00373 . . . . Bpe11g00685 . . . Cmo02g01521 Cmo15g01264 . . . . . Cpe13g00176 Bhi12g00205 . . Lac11g2136 Hepe06g1582 . Lcy12g1700 Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 Lsi09g00305 . . Cme09g01720
Vvi16g598 . . Bda05g00053 . Bpe03g00129 Bpe07g00952 Bma10g01194 Bma14g02065 Cmo16g00156 Cmo18g01242 . Cma15g01199 . Car15g01086 Sed01g3956 . Cpe14g00126 Bhi01g01362 Tan01g0293 Cmetu09g0649 Lac11g2136 Hepe07g0187 Mch10g0183 . Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 . Cone5ag0843 . Cone15ag0117 Lsi05g01262 Csa05g00322 . Cme06g00965 Blo07g00425 Blo09g00089 Bda06g00665 . . . . . . . Cmo15g01264 . . Car16g00129 Car18g01127 Cpe09g00110 Cpe13g00176 Bhi12g00548 . . . . . . Cla05g00850 Cam05g0936 Cec05g0940 Cco05g0942 Clacu05g0923 Cmu05g0882 Cre05g0967 . Csa03g01680 Chy06g00914 Cme09g01720
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001123 3 2 4 5 4 2 4 2 2 1 2 2 2 2 2 4 2 7 4 2 2 2 2 1 2 2 2 4 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01086 Car_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0