Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01094 ATGACGTCGTCGGTTCTTCTAGAGCGTCATCGGGCCTTTTCGAGCCTTCTATGTAAGTTCATATTCTCGCGTTCTATGGGCGGTGGTCCTCGGACCTTCCCCGGAGGCATTAACAAGTGGCAATGGAAGCGAATGCATGAGAAACGGGCTAAAGAGAAGGAGAAAAGGCTTCTCGAACAGGAGAAGCAGCTCTACCAGGCTCGAGTTCGTTCTGAAATACGCTCCAAGCTTGCTGGTGATTACGAAATTTCGAAGAATTCTGACCCTTCTACCAGTTACTCCCCAATGAGCCCTAGTGAGCATATTCATGCCCTAGCTAATAGGTTCATGAAAGAAGGAGCGATTGATTTGTGGAATGAAGATGATGGTCCATTGAAGACTCCGATACCGAGGCCGCAATTGCACGGAGGATTACGACGGATTGCATCAAATGATCGGAGTGGATTTATTAGATCGCCTATTGATGTCAAGAAGTTGTTAACGGAGAAACATGATGGATTAGAAGGGCCTCAGAATATGGGATTGGGAAACTTGAACGGCGATAATTTGAAGGGTAGGAGCTATTCAGTGCAAACTCGAAGGAGCTTCCGCAGAAATGAGAGCTCATCGAGTGACGATGACACGGGGTTTAACTCAGGTGTCGATTCAGTAAAACCTTTTGTGCATAAGTTAGCACGTAGCTCTGATAAAAATGTGAAATCAAGAAATCTTAACAGTGTTAGCAATGACAGGAAGGCTGTAGCTCAGGGGAAGATGAAATTTTGGAGAAAAGGGAGTTCGTCAAGCGATGATGATTCAGAAGACGAAATGGATAATGTGGATAAGGATTTGAGAAGTTGGAAGGATTTGAGAACTGGGAGTAGTGCTTCCTTGGGGAAGTTTGATCTGAAAAAGAGGAGGGTACCTCTAAAACCATATGGTGAAGAAAGTGATTTTGCTGAGCAAGTTCAGCTGCTTAGACATGAACTCAGCAAGAAGAATGCAGCTGAAGACGAAGGTGATAAGAACAAGGAGACAATTTTCACTCAGAAAAGATTTGACGAGTGTGGCATATCTCCGCTGACAGTCAAAGCACTTTCTTCCGCTGGATATGTCCGAATGACTCGTGTACAAGAGGCTACTCTATCTCTTTGCCTTGAGGGGAAGGACACCTTGGTTAAGTCAAAAACTGGCAGTGGAAAGAGCGTTGCTTTTCTGCTTCCTGCCATTGAAGCAGTTTTGAAGGCTGCATGTAGCAGCAGTAATCAAAGGGTGCCTCCAATTTCTGTTCTGATTCTCTGCCCCACCAGGGAACTTGCCAGTCAAATTGCTGCAGAAGCAATTGCTCTGCTAAAGTACCATGATGGTATTGGAGTGCAAACGTTAGTTGGAGGCACTCGATTCAAAGATGATCAGAAACGGCTAGAATCAGTTCCCAGCCAGATTATAGTTGCTACTCCTGGTAGATTGCTCGACCATGTCGAGAATAGGTCTGGCTTGTCTGTGCGACTGATGGGATTGACAATGCTTATTCTTGATGAAGCCGACCTGTTATTGGACTTGGGATTTCGGAAGGACATTGAGAAAATTGTTGACTGCTTGCCCCGCCGAAGGCAGTCCCTGATGTTCTCTGCAACTATTCCAAGAGAGGTCCGGCGAATATCTCAGCTAGTTTTGAAAAGGGAACATGTCTTTGTTGATACTGTGGGCCTTGGTTGTGTGGAAACTCCAACTCAGGTCAGGCAGTCGTGTCTTATAGCACCACATGAATCTCATTTTCAAATAGTATGCCATCTTTTGAAGGAACATATCTCATGCACTCCCGAATACAAGGTTATAGTTTTCTGTACAACAGGGATGGTAACATCACTCTTCTACGTGCTTTTCCGGGAATTGAAAATGAACGTCAGAGAGATGCACGCCAGGAAGCCTCAACTTTATCGAACACGTATCTCCGATGAATTCAAACTGTCAAAACGGCTCATTCTTGTTACATCTGATGTTTCATCTCGTGGTATGAATTACCCTGACGTTACCTTGGTCATACAGGTGGGCATACCATTTGACAGGGAGCAATATATACATCGTCTTGGACGAACAGGACGTGAAGGCAAAGAAGGTCAAGGTATCTTGTTGATTGCACCATGGGAGGAATATTTCCTGGATGCGTTAAAAGATCTGCCTCTTGAAAGATGCCCTCTACCCCAGTTGGATTCAGGCTTAAAGCTAAAGGTAGAGGAATCAATGGCAAAGGTTGATACCTCCATCAAAGAAGGTGCATATCATGCATGGCTAGGTTATTACAACTCAATCAGAGAAATTGGCAGGGATAAAACCACTCTGGTTCAGCTTGGCAAACAATTCTCCGAGTCAATTGGTCTTCAAAAGCCACCTGCTCTTTTCAGGAAGACAGCCCTAAAGATGGGTTTGAAAGATATACCCGGCATAAAAATTCGGAAGTAG 2442 44.72 MTSSVLLERHRAFSSLLCKFIFSRSMGGGPRTFPGGINKWQWKRMHEKRAKEKEKRLLEQEKQLYQARVRSEIRSKLAGDYEISKNSDPSTSYSPMSPSEHIHALANRFMKEGAIDLWNEDDGPLKTPIPRPQLHGGLRRIASNDRSGFIRSPIDVKKLLTEKHDGLEGPQNMGLGNLNGDNLKGRSYSVQTRRSFRRNESSSSDDDTGFNSGVDSVKPFVHKLARSSDKNVKSRNLNSVSNDRKAVAQGKMKFWRKGSSSSDDDSEDEMDNVDKDLRSWKDLRTGSSASLGKFDLKKRRVPLKPYGEESDFAEQVQLLRHELSKKNAAEDEGDKNKETIFTQKRFDECGISPLTVKALSSAGYVRMTRVQEATLSLCLEGKDTLVKSKTGSGKSVAFLLPAIEAVLKAACSSSNQRVPPISVLILCPTRELASQIAAEAIALLKYHDGIGVQTLVGGTRFKDDQKRLESVPSQIIVATPGRLLDHVENRSGLSVRLMGLTMLILDEADLLLDLGFRKDIEKIVDCLPRRRQSLMFSATIPREVRRISQLVLKREHVFVDTVGLGCVETPTQVRQSCLIAPHESHFQIVCHLLKEHISCTPEYKVIVFCTTGMVTSLFYVLFRELKMNVREMHARKPQLYRTRISDEFKLSKRLILVTSDVSSRGMNYPDVTLVIQVGIPFDREQYIHRLGRTGREGKEGQGILLIAPWEEYFLDALKDLPLERCPLPQLDSGLKLKVEESMAKVDTSIKEGAYHAWLGYYNSIREIGRDKTTLVQLGKQFSESIGLQKPPALFRKTALKMGLKDIPGIKIRK 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8617391 8621654 - Carg16648-RA Car15g01094 162931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01094 813 Pfam DEAD/DEAH box helicase 368 546 IPR011545 GO:0003676|GO:0005524
Car15g01094 813 Pfam Helicase conserved C-terminal domain 590 696 IPR001650 -
Car15g01094 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 558 IPR014001 -
Car15g01094 813 MobiDBLite consensus disorder prediction 175 197 - -
Car15g01094 813 Coils Coil 43 70 - -
Car15g01094 813 MobiDBLite consensus disorder prediction 165 271 - -
Car15g01094 813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 592 742 IPR001650 -
Car15g01094 813 MobiDBLite consensus disorder prediction 231 245 - -
Car15g01094 813 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 344 372 IPR014014 GO:0003724
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01094 - - - csv:101217912 1320.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01002 Car-Chr7:5715611 Car15g01094 Car-Chr15:8617391 1.88E-19 dispersed
Car08g00108 Car-Chr8:629485 Car15g01094 Car-Chr15:8617391 0 dispersed
Car15g01094 Car-Chr15:8617391 Car13g00880 Car-Chr13:9269409 8.60E-58 dispersed
Car15g01094 Car-Chr15:8617391 Car02g00904 Car-Chr2:6433070 4.28E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g359 . . . . . . Bma07g01642 . . . Cma02g01094 . . Car15g01094 . . Cpe05g00622 . . . . . . . . . . . . . . . . . . . . . . . Blo19g00316 . Bda09g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007400 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 3 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01094 Car_Chr15 FPKM 11.327943 15.706731 33.666374 32.746761 14.520286 15.8206 14.76449 46.990753 41.887604 43.922794