Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01104 ATGGGGAAAGGGAGACCAAGAGCTGTGGAAAAGGGTGTTTTAGGGCAAAATTTGAGTGTATGTTCATCTGCTTCATTGAATATACCATCTGGACCTGCGTTTTATCCAACTGAAGATGAATTTAGAGACCCATTGGAGTATATATATAAGATCAGACCAGAGGCTGAGCCGTATGGGATTTGTAGGATAGTGCCTCCTAAGAACTGGAAACCTCCATTTGCATTGAGATTAGATTCTTTTACATTTCCCACAAAAACTCAGGCCATTCATCAATTGCAGGTTAGACCTGCTGCCTGTGATTCAGAGACGTTTGAGCTTGAATATAATAGGTTTTTGGATGGTCATTTTGGCAAAAAGATGAAGAAGAAGGTTGTTTTTGAGGGAGATGAGTTGGATTTGTGCAAGTTATTTAATGCAGTGAAGCGTTATGGTGGGTATGATAAGGTTGTTAAGGAGAAGAGGTGGGGTGAGGTTTTTAGGTTTGTTAGATCAACAAGGAAGATTTCAGAGTGTGCTAAGCATGTGCTTTGTCAATTGTATCGAGAACATTTATATGATTATGAGAACTATTATAATCAATTGAATAAGGATGTCACGAAGAGTTCAAAAAGGAAAATGCAAAATGAGAAGCTTACGGAGTGCTTGGCCGAAATTTCAACCTCTAAAAGGAGGCGGCAGAACACAGACGATTGTAGAGTCAAGGTCTCAAAGTTAAAAGACGAAGAAGATAACGATCAGATTTGTGAGCAATGTAAAAGTGGATTACATGGTGAAGTGATGCTTCTATGCGATAGGTGCGACAAGGGGTGGCACTTATATTGTCTCTCACCTCCTTTAAAGCAAGTTCCACCAGGGAACTGGTATTGTTTAGATTGCTTGAATTCAGAAAAGGATAGTTTTGGTTTTGTGCCTGGTAAAAGCTTCTCCCTGGAAGCATTTAAGCGTATGGATTGCAGGGCCAAGAAGAAATGGTTTGGCTCAGGGTCTGCTTCTAGGACGCAAATTGAGAAGAAGTTTTGGGAAATTGTGGAAGGTTCATTTGGTGAGGTTGAAGTTAAATATGGCAGTGACTTGGACACATCAGTTTATGGCAGTGGCTTTCCTCGTGAAAATGTCCAGAGACCAGAATCAATTGATGCTAAGCTGTGGGATGAATATTGCAATAGTCCTTGGAATCTCAATAACTTGCCCAAATTGGAAGGGTCTATGCTTAGAGCCATTCGTCACAATATTACTGGTGTTATGGTGCCCTGGTTGTATATTGGGATGCTATTTTCATCGTTCTGCTGGCATTTTGAAGATCATTGTTTCTATTCAATGAATTACCTGCACTGGGGTGACCCAAAATGCTGGTATAGTGTACCTGGTAGTGAAGCTACTGCTTTTGAGAAGGTTATGCGGAATAACCTTCCTGATCTTTTTGACGCACAACCTGATTTGCTTTTCCAACTTGTCACCATGTTGAATCCATCCGTCTTACAAGAAAATGGCGTACCTGTTTATACTGTACAGCAGGAGCCTGGAAATTTCGTTGTGACCTTCCCTAGATCTTACCATGGGGGTTTTAATCTTGGATTAAATTGTGCTGAGGCCGTAAATTTTGCTCCAGCTGACTGGATGCCTTATGGTGGGTTTGGAGAAGAACTGTATCAGCTTTATCACAAACCTGCTGTTTTTTCTCACGAGGAGCTTATCTGTGTGATAGCGAAGATGGACTGCAACGACCGAGTTTCTCCTTACCTGAAGAAAGAGTTACTTAGGATATATTCTAAGGAGAAAAGTTGGAGAGAACAACTTTGGAAAAATGGTGTAATCAGATCTTCTCCATTGCCTCCTCGGAAGTGTCCTGAATATATCAGTACTGAGGAGGATCCAACATGCGTAATTTGTAAGAAGTACCTTTATCTTTCAGCTATAGGTTGCCATTGTAGGAGATCTGCTTTTGTATGTTTAGAGCACTGGCAACACCTTTGTGAATGCAAGTACAGCAGGCGGCGCCTTCGGTACCGTTATACACTTGCAGAACTATATGATTTGATTGCTATAGTTGATAAATCTATTTTTGGGGAGACAACTGAAAGTAAGGATTTGCGACGGGTGGGCTTATGCTTCACTGAACGATGCACTTTGACAAAAAAGGTGAAAGGTGGTCGTGTCACTCTAACTCAACTTGCAGAAAAATGGTTATTGCATTCGAGTAAGATTCTTCAAGATCCGTTCTCAAATGAGGCATGTGTTAAGGTTATGAGAGAAGCCGAGCAATTTCTTTGGGCTGGTCATGACATGGATCACGTTCGTGATGTGGTAAGAAACTTGGACGAAACTCAAAAGTGGGTTCAAGGCATCGGGGACTCCATTTGTAAAATTGAAGCGTGGTCATGTGATCATTCTGGAAGTTCAGAGAAAATTTGCATGGATCATGTAAATAATTTGTTGAGTCTACCCCCAATATCATGTAACCATCCTGGGTACCTCAAGTTGAAGGATTATGTTGAAGAAGCAAAGATGTTGATACAAGATATTGATAATACCTTATCAAGATGCCCTAATGTTTCTGAATGGGAAATTTTGTACTCGAGAGTGTGTGCCTTTCCAGTCCATATCAAAGAAAGTGAGAAGTTATCGGAAAAAATATCAATAGCGAAGTTCTTTCTTTTCCGTGCCCAAATTGCCTCTGCTTTCTCCTCCGTTTGGAAGTCTTGCATAGAAAGTGTCAGAGAAATTTTGGAGAAACAGCCGGCTGCTTTTGAGGTTGAGGTTCTTTACAAGTTGAAGTTTAAGATTTTGGAACTAGGAATCCAGCTTCCAGAGACAGAAATGGTACTGGATTTAATAAGGCAAGCTGAACTATGTCGTTCTAAATGTGAAGAAATTATGAAGGCTCCCATGAATTTGAAGATTGTCAAACAGTTCCTTCAAGAATCAAACGGTTTTGCTGTTAATATACCTGAACTGAAGCTTTTAAGACAGTATCATGATGATGCTGTTTCATGGAAGGGTCGTCTTAATGCTATTATGGTTAATGTTCATGAACGGGAGGATCAACATAATTTTATCTTTGATTTCATGGAATTCTGGGGGTGGGCTGAGACAGTTGATGATGTACCTTTAGTTGAGGTTGAGTTGAAGAAGGCTTCTGTCAGGGAAAAAGCTCAAAAGTTACGCGATACCAAGGTTACTATGGAATTCATGCAGAAACTAATGGAGGAGGCTGTTGAATTAGAACTTGATAAGGAAAAATTGTTTGCTGATATTCGTGGAGTTCTCGATTCAGCAATGAGTTTAGAGAAGAGAGCAATGGATTTTCTATCCCATGGGGCCCGGTTATCTGATTTTGAAGAGATTATAAGGACTTCTGAAGATTTATGTGTTATTCTACCTTCTCTTCATGATGTAAAGAATGAAGTATCCTTGGCCAAATCCTGGTTAAATTTTTCGAAGCCTTTCTTAGAATCTGTTCTCCCTATGTCTTCTGCACGAAGATCGCAGCTGAAAATTGAAACACTAAAGGAGTTGGTTTCTCAGTCAAAACTCCTTAAGGTTACTTTGGACGAAAGCAGAACGCTTGAAACCGTACTGAGAAACTGCGAGAATTGGAAAGAGGGAGCAAACTCTTTATTGCAAGATACTGATAATCTTTTGAATGCGAGTGATATAGGAGATGGACTGAGCAATTGTCTTATTCCTAAGATTGAACAATTAATTGATAGAATCAATACTGCTATTACAGCCAGTTTATCTCTTGATTATGACTTCCGTGAGATTTCCAGACTTCAAAGTGCTTGTTCTACACTCATCTGGTGCAATAAAGTTCTTTCTCTTTGCCATGTTATTCCTTCTTATCAGGATGTTGAGAGCTTGTTGAGTGTTGAAGAGAATAGTTCATGTTTATATGCCTCCTGTGTTATGTCGAGCTTAATGGTGGACGGTGTCAAATGGCTGAAGCAAGCCTTAGAGAGTATCAGAATCAACTTCTCAGCCATGAATGATCAACTTGTAAATGCTATTCGGACGCACAAGTTGTGGCTGGAAGAAGTACGTCAATTTTTTGTTATTAAGCGTGCTGAACGATCGTGGACTCGGTTATTAAAACTTAAGGAAAAAGGATATGCCGTTTCCTTCAATTGTTCTGAGCTACAATTAATTTTATCCGAAGCTGAAAAGATTGAAAAGTGGAAGAAACATATGCGGGAAATCATGAAAACATCTTTTGGGGATGAAAGTTCTTTGCTTGGTTGTCTACTAGAGATAAAGAAATCACTGGATAGATCCCTAAACATATATGAGAAGTCGTTGCTCTACACTGATCAAAACTTATGTGTGTGTTGCTCTAGCGATTCACAGGATCAGCATCTTTTTACTTGCACAGTTTGTAAAGAAAGCTACCATTTGCAGTGCCTGGGACAAACAAAAGAAAAAACAAACAGTACAGATGCCTTTATGTGCTATTATTGCTGTAGCTTAAGGGCCGTGTCCTCAATTGATAAAAGTGGAGGTCCCTTGAGGTTTTTAGCAAATCGTCCTGAACTAGGATTGCTCACTAAGCTCCAATCTGATGCCTTGAACTTTTGTGTCTGGATGGAAGAGGAGGATGTATTACAGCAACTAGTAGAGCAGGCTTTAGTCTGCAAATCTCACTTGACAGAAGTCTTGGACTTTGCCTCACATTGTCTCGATAAAGATTTTAGTACCACCTGCAAGAGGTTAACAGTAGCTTTAAAGGCTATGGACGTTGCAGGCATTAACGATCAGGAAGGTAAGTGTGGCCTTGAGATGGAACTAGTGAGGAACTCGTGGAGATTCAGAGTCAAGGAAGCTCTTGAAGGTTCTGAAAAACCCACAATGCAACAGGTCCTGGAGCTTCTCGAAGAGGGATCGGCCATAAGCATTCCGATTGAAGATTTCTACAGAAAGAAACTTTTAGAAGTGAAGATTGTTTGCTCGAAGTGGAGAAGTCTTGCAAGGAAGATTTCAGCTGACTGTGGGGCTCTTGAATTGGAGAAAGTTTTCGAACTGATCGTGGAGGGTGAAAATTTACCTGCATACCTCGAGAGGGAGCTCAAGTTATTGAGAAATCGAAGTATGCTTTATTGCATTTGCCGAAAGCCTAATGATCGCAGACCAATGCTTGCTTGTGATATTTGTGAAGAGTGGTATCACTTTGATTGTGTCAAGATTGAATCTACTCCGAAGATATACATCTGCCCAGCCTGCAAACCGCAAGTAGACAATAAAATGTTGATTCAGCTATCAACAGAATATGAAAGTCTGATCTCTCTCAATCAAACCATTTCCATTTCTGAATTCATAGTTGGTTCTCTTTTGGATGAATGGGGTGCTTTTCCAGGCGCTTTCCGATCTACCGTCCCTAGGAGCGAGGGTTCAATAGGCACAAAGTTTGTGGAGCCAAAGACCCCTTCTCCTCAGCGCACGAAGCAGAGATCGAAACCGAAAAAAACAAAGCGAAATTTAGTTCGAAGCGTGACGGATTGCTACAGAGAAATCAGATGCCCAAGTGGAATAGAACGCTTATGGTGGCAAAACAGGAAGCCTTTCAGGAGAGTTACGAGAAGGAGAGCAGAGTTTGGGAGTCTCTCACCATTTTTCCTGATTGAGCAATAA 5622 40.59 MGKGRPRAVEKGVLGQNLSVCSSASLNIPSGPAFYPTEDEFRDPLEYIYKIRPEAEPYGICRIVPPKNWKPPFALRLDSFTFPTKTQAIHQLQVRPAACDSETFELEYNRFLDGHFGKKMKKKVVFEGDELDLCKLFNAVKRYGGYDKVVKEKRWGEVFRFVRSTRKISECAKHVLCQLYREHLYDYENYYNQLNKDVTKSSKRKMQNEKLTECLAEISTSKRRRQNTDDCRVKVSKLKDEEDNDQICEQCKSGLHGEVMLLCDRCDKGWHLYCLSPPLKQVPPGNWYCLDCLNSEKDSFGFVPGKSFSLEAFKRMDCRAKKKWFGSGSASRTQIEKKFWEIVEGSFGEVEVKYGSDLDTSVYGSGFPRENVQRPESIDAKLWDEYCNSPWNLNNLPKLEGSMLRAIRHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGDPKCWYSVPGSEATAFEKVMRNNLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYTVQQEPGNFVVTFPRSYHGGFNLGLNCAEAVNFAPADWMPYGGFGEELYQLYHKPAVFSHEELICVIAKMDCNDRVSPYLKKELLRIYSKEKSWREQLWKNGVIRSSPLPPRKCPEYISTEEDPTCVICKKYLYLSAIGCHCRRSAFVCLEHWQHLCECKYSRRRLRYRYTLAELYDLIAIVDKSIFGETTESKDLRRVGLCFTERCTLTKKVKGGRVTLTQLAEKWLLHSSKILQDPFSNEACVKVMREAEQFLWAGHDMDHVRDVVRNLDETQKWVQGIGDSICKIEAWSCDHSGSSEKICMDHVNNLLSLPPISCNHPGYLKLKDYVEEAKMLIQDIDNTLSRCPNVSEWEILYSRVCAFPVHIKESEKLSEKISIAKFFLFRAQIASAFSSVWKSCIESVREILEKQPAAFEVEVLYKLKFKILELGIQLPETEMVLDLIRQAELCRSKCEEIMKAPMNLKIVKQFLQESNGFAVNIPELKLLRQYHDDAVSWKGRLNAIMVNVHEREDQHNFIFDFMEFWGWAETVDDVPLVEVELKKASVREKAQKLRDTKVTMEFMQKLMEEAVELELDKEKLFADIRGVLDSAMSLEKRAMDFLSHGARLSDFEEIIRTSEDLCVILPSLHDVKNEVSLAKSWLNFSKPFLESVLPMSSARRSQLKIETLKELVSQSKLLKVTLDESRTLETVLRNCENWKEGANSLLQDTDNLLNASDIGDGLSNCLIPKIEQLIDRINTAITASLSLDYDFREISRLQSACSTLIWCNKVLSLCHVIPSYQDVESLLSVEENSSCLYASCVMSSLMVDGVKWLKQALESIRINFSAMNDQLVNAIRTHKLWLEEVRQFFVIKRAERSWTRLLKLKEKGYAVSFNCSELQLILSEAEKIEKWKKHMREIMKTSFGDESSLLGCLLEIKKSLDRSLNIYEKSLLYTDQNLCVCCSSDSQDQHLFTCTVCKESYHLQCLGQTKEKTNSTDAFMCYYCCSLRAVSSIDKSGGPLRFLANRPELGLLTKLQSDALNFCVWMEEEDVLQQLVEQALVCKSHLTEVLDFASHCLDKDFSTTCKRLTVALKAMDVAGINDQEGKCGLEMELVRNSWRFRVKEALEGSEKPTMQQVLELLEEGSAISIPIEDFYRKKLLEVKIVCSKWRSLARKISADCGALELEKVFELIVEGENLPAYLERELKLLRNRSMLYCICRKPNDRRPMLACDICEEWYHFDCVKIESTPKIYICPACKPQVDNKMLIQLSTEYESLISLNQTISISEFIVGSLLDEWGAFPGAFRSTVPRSEGSIGTKFVEPKTPSPQRTKQRSKPKKTKRNLVRSVTDCYREIRCPSGIERLWWQNRKPFRRVTRRRAEFGSLSPFFLIEQ 1873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8682827 8704475 - Carg16638-RA Car15g01104 162941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01104 1873 Pfam jmjN domain 32 65 IPR003349 -
Car15g01104 1873 MobiDBLite consensus disorder prediction 1792 1822 - -
Car15g01104 1873 Pfam PHD-finger 247 294 IPR019787 -
Car15g01104 1873 Pfam PHD-finger 1697 1740 IPR019787 -
Car15g01104 1873 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Car15g01104 1873 ProSitePatterns Zinc finger PHD-type signature. 1698 1738 IPR019786 -
Car15g01104 1873 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Car15g01104 1873 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Car15g01104 1873 Coils Coil 1037 1057 - -
Car15g01104 1873 Pfam C5HC2 zinc finger 627 678 IPR004198 -
Car15g01104 1873 Pfam ARID/BRIGHT DNA binding domain 120 188 IPR001606 GO:0003677
Car15g01104 1873 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Car15g01104 1873 Coils Coil 1064 1084 - -
Car15g01104 1873 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Car15g01104 1873 Pfam PLU-1-like protein 910 1209 IPR013637 -
Car15g01104 1873 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01104 K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] - csv:101216734 3157.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00566 Car15g01104 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00351 Car-Chr13:6133873 Car15g01104 Car-Chr15:8682827 2.45E-14 dispersed
Car15g01104 Car-Chr15:8682827 Car18g00498 Car-Chr18:3631145 4.78E-12 dispersed
Car17g00992 Car-Chr17:7944339 Car15g01104 Car-Chr15:8682827 1.75E-09 dispersed
Car20g00928 Car-Chr20:10055219 Car15g01104 Car-Chr15:8682827 8.27E-11 dispersed
Car15g01104 Car-Chr15:8682827 Car05g00715 Car-Chr5:4922003 5.82E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4869 PF08429 PLU-1 5.30E-22 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01104 Car_Chr15 FPKM 5.640671 6.303433 9.016408 7.434407 8.039427 8.199376 7.893669 16.622297 13.71304 16.232079