Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01106 ATGGGGAACCGAAGATTTGCGCAGGTTTCCACTAGCGATGAGGAAGACGAAGTACCAGTTACGAAGCAGCAACCTTCCAATTCAGACGACAACTTGTCAATTCGTAGGAAGAGGAAGAAGATGAAGCTTCTAGAGGAGGAGGAGGAGGAGGAGGAGGTGGAAGGGGACGAGAGGCATCGCAGGAGTAGAAGAAGTAGTAACAAGGGAGAGAAGGAGGTGGAAGCGTCGAAACGACAGCAGGCGGAAGATGAAGATGAGGATGATCAGTCGCAAGAGGATGCGAAGCCGATTGGGGATGCTGTTAGGGTTTCTGGGAAAGGGAGGGGACGGAAGAGCCACTACAACGCGTTTGAATATGATGGGAACAAATATGATCTTGAGGATCCGGTACTTCTAGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATTAAGGATATTACTCGGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTACCGTCCTGAAGAAGCTGAAAAAAAGGGTGGTGGAAGTTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGAGATCAGGTTCCTGCAGAATCTGTAATGCACAAATGTGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAATTCGTAAGCAACATCCTGGATTTATTGTGCGAAAAGTATACGACACAGTTGAAAAAAAACTTTGGAAACTAACTGATAAGGATTACGAAGACTCTAAGCAGCAGGAAATTGATGAACTTGTCAAGAAGACTATGTCACGGTTAGGAGATCTCCCTGATATTGAGCCTGAAGATGCCACACCTGATCTGGAAGATCAGTTGAAAACTAAAAGAAGTCTCAAAAGAAAAAACATTTCTCCTCTTGATGTTACAAGAGATGAATCAGAGGCAACCAGATCTGATCACAGCTTAAAAGCTGAAACTCCAGGAAGCTGTCCAACTAATCGATCAGAGTACTACTCCATATTGGAAATACACGATGTTCTAACAGGTGAAACACATCGAGATAGATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACATATGTCACTCTCCTGAGAACACACGTGAGGATGATACAGGAAAAACTGCTGCTAATGGTGTCAACCATGAAAATAAGAATCCAGAATCGTCGAGGACAGCAGAGAACAATGATAAAAGCTGCAAGTCTTTTCTCTGGCCAGATGCAGCCGTTCCGGCAATAACTGGTCTTGAGAAGGTGTCGAATGATGCTCTGTCTGCCGATTTTCAGAAGTATAACCAAAAAATGCGGCAATTGGTGTTCAATCTCAAGAATAATCGCTTACTAGCTCAACGGCTGTTAAATGGAGAGTTGGAACCGTTAAAAATCCTTAATATGTCACCCAATGAGCTTAAGGAAGGACTGACTGCTGAGGAGACAGCTGCAAATAAAGAGCCTGATGAATCTGAGCGTATGCAGATGAAACAGATGACAGATGCTCGGTGTTCAAGATGCACAGAATGTAAAGTGGGTGTCAGGGAAATCATCCAAACAGGACATGGAGAACGATATAAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTATGCCTCTAGGGATGAACTATCCATGCTGACAATAGACGCAGCGACAAATTCTACAAAGGGTGTTGGAACTGCACCATGGGCAACTGCCAAATTCGAAGATGTGGAGAAAAGTCTACTCAGTCCTCACGAACCCGAAAAAGCTGCTGAGGACCTCTTCAAAAAGACGACTGAAGCGTACATGCCAGTATTGGATAGCCAGAAATCTAGCAAGTCTAAAAAGGAAGACAACGTAGAAACTACAAAAAATGTCCAAGCTGTGGATCATACAATGGGGCAAGATACAGAATTGGACTTTGACAGTATTTGCTCTGTGGATCTGAGTCCTAACACAGTTCTACCATCGATCCCACGACATTCCAGCATTAAGACTAGAAGCTCAAGAAAAAAACCCAAGCATAAAGATTTCGTAATGAGTGTGAAGGATAATTTTACTGAGATTAGATTTGGTGGCAGCCGTAGGTCTCGAAAAAGCAATTCATCTAGCCTACTTGAACTAGAAGATAATGAGCATATAGGTTTTGAATTGAATGTGAAGGATGATTTCACAGAGATTAGATTTGGCGGCGACCGAAGTTCCCGTAAAGGCGATTCACCTTGCCTAGATGAATTGGAAGATGATAAAGCGCTCAAACGGGGTTCGAAGTACCAAAGCTATGAAGATGTAGGTAGTATAGAAGGGATGAGCATTCAAGGAGAAAGGAGAAAGATAGAAATTTCTCATGACAATAAGATCTCTTTGTCTTCTGGTATTGTTGATTCTTTGTGTAGTTCAGATGAGGAAAAACTAGAGAGGAGAGATAATGTATTATCTTTGAACACAAAACTGAATCAATCATCAGTTAGTAAGGCTTGCATACGCCCACGTTCATCGGATAGCTTCCTTGAGATCTACTTAGGTTCCGAGAACAGTGAAGCTCTATCGAAAGATTCAAGCAATCAGCTCGGAAATGTTACAGGCATTAGACCTCTTCACAATGGCAAGAAACTTTTCAAGAGAGACAAGGTTTACGCATTGCAGAAGTCGCTCTCTGCTAAGGTAGAAATGCCTAAAAACCAGCTTCCGTTGGAGAGTGATCTACGGTTTAGACACGGCCAAAAGGTTCGTACAAGCCCTTTCAGGAAAATGTTGGATCCATTTATGAAGTCTAAATCTGTTAGAAGTCGTTTCAGTCATGCAATAGAAGCTGATGGAGATAAAGCTGTCAAGACAATTGACTTGCAGAGAAACGAGACACACAGAAAGGCGAAGAGTTCAGATTGTGAATCCGATTTTTCGAATAATGATAATCGCCATAATGTTGTTGCATCTTCGCCCGTACATTTACATGGCTCTCTCAAGTTGGAAAGAAAACATGGGATGCCATTTTTTGAGTTCTCTCAGAGCTCTCCCGAAGATGTCTACGTAGCCAAGACGTGGAAGACAGACGATGCTTTTAAATGGGTATACACATTTCATACCCAAGATCATCAAAAGAAGAGCAATGCAAGTAATTTTGGATTGAATCATAGCTGCAAAAACTCCTTAATGGTGGGTCAGATGCAAGTTTCCTGTTATTTATCCTCCGAACTTCGAGATGGTGGTTTTGACAACTCGATGGTCACAGAATTTGTTCTGTACGAAACGGGGCGTGCTAGAAAAAGTACAGCATCACAGGGAAGTTGCGACTTTATCCACGACGCTGTCAAACCTCCTAAAAGTTCTAATTCAGCCTTGGTTGAGGAAGCTTTTAGTATGAACGATGGGACCTTAGAAAAACCAAAATTTCAGCAAAAACAAGCTTCTGAAAACTGTGATTATGGTTCTATTGATTCTTGCCCTTGGGATTCAGCAGATTTACATCCAGACCTGGAAGCTGCAGCTATTGTTATGCAAATCCCATTTAGAAAAAGAGGTGATAAGCCAAGCAGCAAATTGATCTCAGCCGTCCAAAACCTCTCTAAGATTGAACAAAGGAAAGACGAACCTCCCCATCACACAACTCGAGAAACTCTGAAGGTGGTCATTCCCATTGGAAACCATGGTTTGCCTACTGTCGAAAGCCATGGCCCTTCTCCGTTACTTGATCGATGGAGATTGGGAGGCGGGTGTGACTGTGGTGGTTGGGACATGGGCTGTCCTCTATTAGTTTTGGGCACCCACAGTGTTGAAAATCAAGCACACAAGGGGAAACAAACCTTTGAGCTTTTTCATCAGGGAGTAAAGGATACGACTCCGGCATTGACTATGAATGTTGTTAAAGATGGACACTACGCTGTCGATTTTCACGCGCGATTATCGACGTTGCAAGCGTTCTCCATTTGTGTTGCTATTTTACATGCGACTGAAGCTTGCAATGCTGTCCAGGTGGAGGAAACAAAAGAGTTGCAGCCTTGCAATTCTTTAAAGGTGCTTCTTGAGGAGGAAGTAAAGTTCTTGATCGACGCAGTCACGATGGAGGAGAAGAAAAAAGAAACGAGAACATTGAAAGAAACACCGTCGTCGTATTTGTTCAATCCTCCGTTTTCTCCGATTGCTAGAGTGTAG 4119 42.95 MGNRRFAQVSTSDEEDEVPVTKQQPSNSDDNLSIRRKRKKMKLLEEEEEEEEVEGDERHRRSRRSSNKGEKEVEASKRQQAEDEDEDDQSQEDAKPIGDAVRVSGKGRGRKSHYNAFEYDGNKYDLEDPVLLVPEDKDQKPYVAIIKDITRNKDGMMVTGQWFYRPEEAEKKGGGSWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPIRKQHPGFIVRKVYDTVEKKLWKLTDKDYEDSKQQEIDELVKKTMSRLGDLPDIEPEDATPDLEDQLKTKRSLKRKNISPLDVTRDESEATRSDHSLKAETPGSCPTNRSEYYSILEIHDVLTGETHRDRWLEKLLEGVQYICHSPENTREDDTGKTAANGVNHENKNPESSRTAENNDKSCKSFLWPDAAVPAITGLEKVSNDALSADFQKYNQKMRQLVFNLKNNRLLAQRLLNGELEPLKILNMSPNELKEGLTAEETAANKEPDESERMQMKQMTDARCSRCTECKVGVREIIQTGHGERYKLECIACGHSWYASRDELSMLTIDAATNSTKGVGTAPWATAKFEDVEKSLLSPHEPEKAAEDLFKKTTEAYMPVLDSQKSSKSKKEDNVETTKNVQAVDHTMGQDTELDFDSICSVDLSPNTVLPSIPRHSSIKTRSSRKKPKHKDFVMSVKDNFTEIRFGGSRRSRKSNSSSLLELEDNEHIGFELNVKDDFTEIRFGGDRSSRKGDSPCLDELEDDKALKRGSKYQSYEDVGSIEGMSIQGERRKIEISHDNKISLSSGIVDSLCSSDEEKLERRDNVLSLNTKLNQSSVSKACIRPRSSDSFLEIYLGSENSEALSKDSSNQLGNVTGIRPLHNGKKLFKRDKVYALQKSLSAKVEMPKNQLPLESDLRFRHGQKVRTSPFRKMLDPFMKSKSVRSRFSHAIEADGDKAVKTIDLQRNETHRKAKSSDCESDFSNNDNRHNVVASSPVHLHGSLKLERKHGMPFFEFSQSSPEDVYVAKTWKTDDAFKWVYTFHTQDHQKKSNASNFGLNHSCKNSLMVGQMQVSCYLSSELRDGGFDNSMVTEFVLYETGRARKSTASQGSCDFIHDAVKPPKSSNSALVEEAFSMNDGTLEKPKFQQKQASENCDYGSIDSCPWDSADLHPDLEAAAIVMQIPFRKRGDKPSSKLISAVQNLSKIEQRKDEPPHHTTRETLKVVIPIGNHGLPTVESHGPSPLLDRWRLGGGCDCGGWDMGCPLLVLGTHSVENQAHKGKQTFELFHQGVKDTTPALTMNVVKDGHYAVDFHARLSTLQAFSICVAILHATEACNAVQVEETKELQPCNSLKVLLEEEVKFLIDAVTMEEKKKETRTLKETPSSYLFNPPFSPIARV 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8719542 8733944 + Carg16636-RA Car15g01106 162943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01106 1372 MobiDBLite consensus disorder prediction 276 311 - -
Car15g01106 1372 Pfam BAH domain 123 238 IPR001025 GO:0003682
Car15g01106 1372 Coils Coil 34 56 - -
Car15g01106 1372 MobiDBLite consensus disorder prediction 361 394 - -
Car15g01106 1372 MobiDBLite consensus disorder prediction 1 110 - -
Car15g01106 1372 MobiDBLite consensus disorder prediction 264 321 - -
Car15g01106 1372 Pfam Domain of unknown function (DUF3527) 970 1305 IPR021916 -
Car15g01106 1372 Pfam Transcription factor S-II (TFIIS), central domain 338 481 IPR003618 GO:0006351
Car15g01106 1372 MobiDBLite consensus disorder prediction 31 46 - -
Car15g01106 1372 ProSiteProfiles TFIIS central domain profile. 342 496 IPR003618 GO:0006351
Car15g01106 1372 ProSiteProfiles BAH domain profile. 122 240 IPR001025 GO:0003682
Car15g01106 1372 MobiDBLite consensus disorder prediction 54 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01106 - - - peu:105124440 1244.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01219 Car15g01106 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01114 Car-Chr6:8349622 Car15g01106 Car-Chr15:8719542 4.79E-22 dispersed
Car14g00576 Car-Chr14:3130662 Car15g01106 Car-Chr15:8719542 6.89E-22 dispersed
Car14g01648 Car-Chr14:13180264 Car15g01106 Car-Chr15:8719542 4.00E-26 dispersed
Car15g01106 Car-Chr15:8719542 Car20g00326 Car-Chr20:1872852 3.78E-28 dispersed
Car02g01219 Car-Chr2:8273921 Car15g01106 Car-Chr15:8719542 0 transposed
Car15g01106 Car-Chr15:8719542 Car02g01218 Car-Chr2:8261650 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007949 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01106 Car_Chr15 FPKM 3.239005 3.375303 3.256665 3.313656 5.385688 5.765445 5.719947 3.061627 3.513398 4.036273