Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01107 ATGGCTGAATCCAAACTGAAACTGGAGCTGGTGGAGTGGTTAAATTTTTTGCTTCCCCATATAAATTTGCCATTGGATGCTTCTGTTGAGGAGTTGAGAGCATGCTTGAGCGATGGAACGGTACTATGCAGCATACTGGAGAAACTATGCCCTGGAGCAGTCCAGGGAGGCAATTCTAAGCCCATCAATCCTAATATTGAAAGTTTTTTGATAACTTTGGATGAATTAGGACTTCCTGGCTTTGAACCATCTGTCCTAGAGCAGGGATCTATTGCTCCAGTTTTGCACTGCCTGAGCACACTTCGAGCTTCATTTGATTTGAGTGCTGGAGATGAGTACATTCAAAATTATTCACGAAAGAAATGGAACTTATATGAAGTAGAATCATTAGATGGAATCAATAATTTCTCTGGGCTAAGATTCCAGGATTTTCAGAATGGTTCAGTTATATCAATGCCATCGTATGGTTTAAACGGTCATATTCAATCTGAGGATCATGAAGGGCAAGAACAAAATCATGATGTTTCTGGTTCTAACATCTTGGAGTTGATAAAATCAAGAAATCTTGAGGATGTCTCTACTCAATCACTTTTCAATACAATCAATGGAATTCTAGATGGCATTGTCGAATCAAAAAATGGAGATGTGTCGCATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGAATTGTAACTCATGCTGGAAACCTGAAACATCAAAGCAATCTTTTGAAAGCTCGAGAGGAGAAATTTCAGTCAAAAATAAAAGCCCTTCAAACCCTTGCAACAGGGACCACTGAAGAAAATGAGATTGTTATGAATCGGCTTCAGCGTATGAAGATTGAAAAATTCAAAGTAGAGGAGATGAAAAACTGTGAGGAGCAGAATAAGATGGCATTGAAGGAGCAAAAGGAACGATGTGATGTCGAGCTTTCAAATCTCAAAGAGGAGCTAGAAAAGGCTAAAAGGGAACATGAAAATCATTGTTTGCAACTGGAAACAAATGCTAAGGAGGATAAAGCTAAGTTTGAGGAGAAACTAAATGAACTTGAATACTTATTAGCGGATTCCAGGAAGAAGGTGGAGGAACTCGAGACATTTTCTGAATCTAAATCACTGAGATGGAAGAAGAAAGAGTTCGTCTATCATAAATTTGTCGTTGACCTGCTTGGAGCTTTTCAGGAATTAAGGATTTCAGTGGAGTCCATCAAACATGAGGTCTTGAATACAAAGAGCATCTATGCTGAGGAGTTTAATTACCTCGGAATGAAGTTCAAAGGATTAGCAGATGTGGCTCAGAATTACCATGCAGTTCTGAACGAAAACAGAAGATTGTATAACGAGGTTCAGGATTTAAAAGGTAACATTCGAGTGTATTGTCGAATTCGGCCATTCCTTCCAGGGCAAAATATGAAGCTAAGTACAGTTGAGTATATTGGTGAAAATGGTGAATTGGTAATTATAAATCCCGCTAAACAAGGCAAAGACAACCGTCGACTATTCAAGTTCAATAAAGTTTTTGGTCCGACATGTTCACAAGAGGATGTGTTTTTAGACACTCAACCATTGGTTCGATCTGTCCTCGATGGATATAATGTTTGCATATTTGCTTATGGACAAACCGGTTCGGGAAAGACGTATACTATGAGTGGGCCTGATGTATCATTGAAAGCAGAATGGGGTGTTAATTATCGAGCGTTAAACGACCTCTTCGAAATTTCTCAAAGCAGGAAGGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAACAAGTTCGTGATCTGCTCTCAACTGGCGGTCTTCCAAAGAGACTTGGGATTTGGAACACCACTCAGCCAAATGGGCTGGCAGTCCCAGATGCCTGCATGAATTATGTTAGATCTACTAGTGATGTCCTGGATTTGATGAAGATTGGATTGGCAAACAGGACAGTTGGAGCCACAGCCCTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACGATTCACGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTGCGTGGTAGTCTTCATCTAATAGATCTTGCCGGTAGTGAAAGGGTGGACCGCTCAGAGGCAACCGGAGATAGGCTGAAGGAGGCGCAACATATAAATAAATCATTATCGGCTCTCGGGGATGTAATTTTTGCTCTTGCACAGAAGAATTCGCATGTTCCTTACAGAAATAGCAAACTAACCCAAGTTCTCCAAAGTTCTTTAGGTGGTCAAGCGAAAACGCTCATGTTTGTACAGATTAATCCCGATGCAGAGTCCTACTCTGAAACCATAAGCACCTTGAAGTTTGCAGAAAGAGTTTCCGGTGTGGAGTTGGGTGCTGCTCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTGATGGATCAGGTGGCAGTTCTCAAGGATACCATTGCAAGTAAAGATGAGGATATTGAGCGGTTGCAGTTGCTTAAAACTAATAGCAATGGCGTAAAGCATGGTGTTAGTTCCCTAAGATATGAATCATTTTCCCCTAGAAAGCACTCTAGCGTAACGCCTCGGCCAAGCCAAAAGCCATCAGGGAGAAGGGGCTTAGGGTTGATTAGTAAAGCAACATCTGACCACGACAACTTCTCCGATTGTGATAGGCGTTCTGAATGTGGATCATATCAATCTATGGATGACTTCAGACATCATAATCGTTCTGGATCAGGATCAACGCATCTGTCTGTAGAGGATTTTAGACATCATAAGCGTTCTGGATCAGGATCGACGCATCTGTCTGTAGAGGACTTGAGACAACAGAAGGAATTTTCTTCACAATCAAGAGCTTTAGGTCAGAATGTTACTGATGATGTTGAGCTTTTAGGCTTTGGGAATGCTGATTCTGATGAGAGATTAAGTGACATATCAGATGGCGGCCTTTCGATGGGGACTGAAACTGATGGATCGCTTTGCAGTGTTGTGGAATACACTTTATTCCCTGAAGTCCCAAAGCCATCAGATGGTTCGTTTGCCGATACCAAACACCCGGAGAGCTCGTCGGATGTAAAAAGTCTAGCTGAGAGTGCAACAACTGGGGGGAAGTCTTTGGTTCCTATTCCAGAAAAAACCAATGCACCGTTGAAGACAGGCCTCAGGCCCCCACAAAGGCCCGTGCAAGCGAAACCGTCGAGAGTTTCACTGACGAAAAGCTTCTCAAAGGCTCCATCAGCATCAAATGCCAAACTTTTCATTGATAAAATGAAAAGTACAAAAGGAGATCAAAGGAGAATACCAAAAAGCTCTCCCTCTGCTGTTAATAACAAAAGAATTATAACTACAAAAGAGAGTGGATATAGTGCACCATCTTGA 3369 41.56 MAESKLKLELVEWLNFLLPHINLPLDASVEELRACLSDGTVLCSILEKLCPGAVQGGNSKPINPNIESFLITLDELGLPGFEPSVLEQGSIAPVLHCLSTLRASFDLSAGDEYIQNYSRKKWNLYEVESLDGINNFSGLRFQDFQNGSVISMPSYGLNGHIQSEDHEGQEQNHDVSGSNILELIKSRNLEDVSTQSLFNTINGILDGIVESKNGDVSHQVAYILRKVVQVLEQRIVTHAGNLKHQSNLLKAREEKFQSKIKALQTLATGTTEENEIVMNRLQRMKIEKFKVEEMKNCEEQNKMALKEQKERCDVELSNLKEELEKAKREHENHCLQLETNAKEDKAKFEEKLNELEYLLADSRKKVEELETFSESKSLRWKKKEFVYHKFVVDLLGAFQELRISVESIKHEVLNTKSIYAEEFNYLGMKFKGLADVAQNYHAVLNENRRLYNEVQDLKGNIRVYCRIRPFLPGQNMKLSTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLKAEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVRDLLSTGGLPKRLGIWNTTQPNGLAVPDACMNYVRSTSDVLDLMKIGLANRTVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKNSHVPYRNSKLTQVLQSSLGGQAKTLMFVQINPDAESYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIASKDEDIERLQLLKTNSNGVKHGVSSLRYESFSPRKHSSVTPRPSQKPSGRRGLGLISKATSDHDNFSDCDRRSECGSYQSMDDFRHHNRSGSGSTHLSVEDFRHHKRSGSGSTHLSVEDLRQQKEFSSQSRALGQNVTDDVELLGFGNADSDERLSDISDGGLSMGTETDGSLCSVVEYTLFPEVPKPSDGSFADTKHPESSSDVKSLAESATTGGKSLVPIPEKTNAPLKTGLRPPQRPVQAKPSRVSLTKSFSKAPSASNAKLFIDKMKSTKGDQRRIPKSSPSAVNNKRIITTKESGYSAPS 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8740997 8749899 - Carg16635-RA Car15g01107 162944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01107 1122 ProSiteProfiles Calponin homology (CH) domain profile. 4 106 IPR001715 GO:0005515
Car15g01107 1122 MobiDBLite consensus disorder prediction 1006 1122 - -
Car15g01107 1122 Pfam Calponin homology (CH) domain 7 102 IPR001715 GO:0005515
Car15g01107 1122 MobiDBLite consensus disorder prediction 1061 1077 - -
Car15g01107 1122 MobiDBLite consensus disorder prediction 845 885 - -
Car15g01107 1122 Coils Coil 440 460 - -
Car15g01107 1122 Pfam Kinesin motor domain 466 786 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car15g01107 1122 ProSiteProfiles Kinesin motor domain profile. 460 788 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car15g01107 1122 MobiDBLite consensus disorder prediction 847 862 - -
Car15g01107 1122 MobiDBLite consensus disorder prediction 1096 1122 - -
Car15g01107 1122 Coils Coil 302 365 - -
Car15g01107 1122 ProSitePatterns Kinesin motor domain signature. 688 699 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01107 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101218386 1906.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01216 Car15g01107 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00838 Car-Chr9:5114425 Car15g01107 Car-Chr15:8740997 1.17E-92 dispersed
Car11g01043 Car-Chr11:7892135 Car15g01107 Car-Chr15:8740997 2.33E-175 dispersed
Car12g00696 Car-Chr12:5018763 Car15g01107 Car-Chr15:8740997 4.12E-143 dispersed
Car14g00439 Car-Chr14:2291941 Car15g01107 Car-Chr15:8740997 2.58E-45 dispersed
Car14g00837 Car-Chr14:4932023 Car15g01107 Car-Chr15:8740997 9.51E-08 dispersed
Car18g00305 Car-Chr18:1835810 Car15g01107 Car-Chr15:8740997 1.13E-90 dispersed
Car15g01107 Car-Chr15:8740997 Car02g01216 Car-Chr2:8243561 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01107 Car_Chr15 FPKM 26.456764 29.604351 22.776463 23.466393 19.387598 19.938446 20.326197 5.44757 3.901368 5.027741