Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01116 ATGTTGCCAGAAAATGGCTTTTTTCTGCAGGTTCGAACTCTTGGCGAGATTTTCAACTCCAATCTTGAGTATAACCTAGGCTACAGTATAAGTAAGCTGAAATGGGAGGTTGCTGCTGCTGCTGTTCTTCGAAAGAAACAGAATCAAATATCGCACCAGGCTACTATTATGTCATACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAGTGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAATCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCCTTGCCTATGCCATATGATGTTGTTTTAACACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGCAATAAGAATGATGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGACGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATCGAACTTTCAAAGGGTGTGAAATCTGTGGTCTTACCAATTGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGACGGAGAGAATCCAAAACTTACAACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGGTGGAAAGAAGTGATATATGTCCTGTGTGCGATCAGGAAATGGTTTTCAGCCCTCCAATTGATTAG 750 42.53 MLPENGFFLQVRTLGEIFNSNLEYNLGYSISKLKWEVAAAAVLRKKQNQISHQATIMSYPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWVERSDICPVCDQEMVFSPPID 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8804557 8806945 - Carg16626-RA Car15g01116 162953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01116 249 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Car15g01116 249 Pfam Ring finger domain 197 238 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01116 - - - cmos:111435815 390.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02713 Car-Chr4:20987428 Car15g01116 Car-Chr15:8804557 7.92E-26 dispersed
Car14g01854 Car-Chr14:14378258 Car15g01116 Car-Chr15:8804557 5.48E-37 dispersed
Car15g01116 Car-Chr15:8804557 Car16g00054 Car-Chr16:373219 1.33E-08 dispersed
Car15g01116 Car-Chr15:8804557 Car15g00226 Car-Chr15:1274735 4.54E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01116 Car_Chr15 FPKM 0.619048 0.47015 0.467515 0.381997 0.829013 1.155533 1.420221 0.313194 0.277327 0.553251