Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g01120 | ATGGGCTTTCCGGCAAGCTACACTGAGCTTCTTCTTCCAAAGCTCTTCATCCACGTACTCTCCGTCCTCGGCTTCCTCAGGAAGCTTATCTCCCTTCTCTTCCGCCTCCTAGGGCTTCAAGATTTTCTCGAACCGGACATTCCCTGGCCCAATCAGTCCGATTCCTTTACTACGGGACCGTTGACGGACCTTGATCCTCTCTCCGCGGCAGTTCTCCGTGAGATTCTCCCCGTCGTGAAGTTTTCGGAGCTTTTGGATCCGCCGGAGAGCTGCGCCGTGTGCCTGTACGAGTTTGAGTCTGACGACGAGATCCGCCGCCTCGCTAACTGTCGCCATATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTATGGACAGAGGACCTGTCCGTTGTGCCGGACGGTGTTCATTCCAGGTGATTTGCGGAGCGGTGTTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCACTCCACAGCGATTCTTCTTCTTCGACTCTTCTCTCTGCTGGTTTGTAG | 534 | 54.12 | MGFPASYTELLLPKLFIHVLSVLGFLRKLISLLFRLLGLQDFLEPDIPWPNQSDSFTTGPLTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPGDLRSGVCNFDDRLWEDSEIFEALHSDSSSSTLLSAGL | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 8843502 | 8844035 | - | Carg16622-RA | Car15g01120 | 162957 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g01120 | 177 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Car15g01120 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g00913 | Car-Chr6:7057838 | Car15g01120 | Car-Chr15:8843502 | 4.01E-37 | dispersed | |
| Car07g00455 | Car-Chr7:2307895 | Car15g01120 | Car-Chr15:8843502 | 2.98E-17 | dispersed | |
| Car07g00640 | Car-Chr7:3246844 | Car15g01120 | Car-Chr15:8843502 | 2.21E-14 | dispersed | |
| Car14g01857 | Car-Chr14:14393401 | Car15g01120 | Car-Chr15:8843502 | 2.30E-41 | dispersed | |
| Car15g01120 | Car-Chr15:8843502 | Car15g00308 | Car-Chr15:1668103 | 6.17E-15 | dispersed | |
| Car20g00604 | Car-Chr20:3399356 | Car15g01120 | Car-Chr15:8843502 | 1.25E-13 | dispersed | |
| Car15g01120 | Car-Chr15:8843502 | Car17g00414 | Car-Chr17:2753942 | 7.94E-40 | wgd | |
| Car15g01120 | Car-Chr15:8843502 | Car02g01203 | Car-Chr2:8170627 | 6.38E-110 | wgd | |
| Car15g01120 | Car-Chr15:8843502 | Car08g00777 | Car-Chr8:5086733 | 2.84E-40 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g01120 | K16281 | - | csv:101215533 | 291.582 |