Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01121 ATGGCTGTGCCCGCATCCACAACAGCTACCATCAACAACGCTTCTACGAATTCCAATCAACCCACCAAGCTCAAGCGCCGAAAGTGCAGGGAAATCGTTGTTTCCTCTTCTTCTGCCAATTCCTCTTCTGGGTTTTCGGTTTCTTCTCATCCAAACGTCGATCGCTCTGTTGTGATCGTTTCTTCTGAGGATTCCTGGTGTTTTCCTGCTTCCAAACCCTCTGTAACCCCTCCTGTTCTTCCTCCTCCGCCGCCTCCGCCGCCGTCGCAATCGCATCGGGGGGTTACTTCTCCAACACCCACTAACGGGAATCGAGCATCGGATTCGGTGATCTCGTCGTCTGCTTTCCGGGTTCCGGTAATGGACTTCTCCGGTGCGGCGTTTAACGGTCATTCTGGATCCACCCATGACTCTTTCCCTTCTGGGTTTTCGAAGTTCAACTCTGCTCTCACCGCCGGTCTTTTGAACCCAATGTCGCCGCCGCCGTCCACCGATAAAACCCGATCGAGTCCGACCCTTTTTGAAATGATGGCCAATGAGCCTGATATTCACTCAAGAACTTCTCAGATCCCTTCTCACAGCTCCTCTGTTTTGGTTCATAAGAACCAAATTCCTGTGGAGGACAAGCAGGGTTTGATGATGCAGAGGATTTCTGAGATTTTGGGATCTCGTAGCCCTGGAAATCAGTTCAATGACGCCTCTAGCAGTGATATTCAGCTCACATTGAGCTCTAAGGATGGGATTAGCGTTTGGATCAACGTTCATCGACAAATTCTCGTAGCTCACAGTCGATTTTTCGCATCGAAGCTCTCGGAACGATGGGCGAAACAACAGCAGTCGACATCTCCATACATTGTGGAGATAGCTGATTGTGATGATATTGAAGTGTACATTCAAACCTTGAAATTAATGTATTGTAGAGATCTCAGGAAGAGACTGATGAAAGAAGATGTTCCCAAGATTCTTGGAATTCTAAAGGTTTCGGCTGCGATCGGGTTTGATGTCGGCGTGTTATCATGTTTGGAGTACTTGGAAGCTGCCCCGTGGGCCGAGGAGGAAGAAGAGAAGGTGGCTTCACTGTTATCTGAGCTTCATCTTGAAGGTGTTGCAGCAGGGGAAGTTCTAAAGAGGGTATCAACTGAAGCTACTGGACTTGAAGATGGCAATGGCAATGGCAATGGCAATGACAATGACAATGAAGAATTACTGCTCAAACTTCTACATGTCGTTCTCGAGGGAAAAGACGAGAAGGCGAGGCGCGAGATGAAAGGATTAGTTTCAAAGATGCTTCGTGAGAGTTCATCGCCGAACGACCTTCGAAAAGAATCCTTGTATGCAGCCTGCGATGGTTGTCTGCAGCTGCTGTGCCATCACTTCATGCGAGCAGTCGGGTCGGACTTTGCCGGTGTCGGGGAGATTGCTAAGCAGGCTGATAATTTGCATTGGATTTTAGATATCTTGATTGACAGACAGATAGCTGAAGATTTCTTAAGAACATGGGCATCTCAGTGTGAATTATCAGCTGCTCACTCTAAGGTGCCTGCTGTTCACCGCTTCGAGATCAGCCGAGTTACTGCTCGGTTACTCGTCGGGATCGGAAAAGGCCAACTTCTGGCTCCTAAAGATGTGAGATATCAGCTTTTACAGACCTGGTTGGTGCCATTCTATGATGATTTTGGCTGGATGAGGAGAGCATCAAGAGGCTTTGATCGCCACTTGATTGAGGATGGCCTAAGCAATACAATACTCACTCTACCTTTAGCTTGGCAACAAGACATATTGCTAGCTTGGTTCAATAGATTCATAAATTCAGGCGAAGATTGCCCGAATATACAACGAGGGTTCGAAGTTTGGTGGAGAAGGGCTTTCTCGAGACGCAAAGGTGAACAGGAACGACCTCGACCAATCCGAATCGCCACCCCATCGGCACAGAATTCGTGA 1941 48.17 MAVPASTTATINNASTNSNQPTKLKRRKCREIVVSSSSANSSSGFSVSSHPNVDRSVVIVSSEDSWCFPASKPSVTPPVLPPPPPPPPSQSHRGVTSPTPTNGNRASDSVISSSAFRVPVMDFSGAAFNGHSGSTHDSFPSGFSKFNSALTAGLLNPMSPPPSTDKTRSSPTLFEMMANEPDIHSRTSQIPSHSSSVLVHKNQIPVEDKQGLMMQRISEILGSRSPGNQFNDASSSDIQLTLSSKDGISVWINVHRQILVAHSRFFASKLSERWAKQQQSTSPYIVEIADCDDIEVYIQTLKLMYCRDLRKRLMKEDVPKILGILKVSAAIGFDVGVLSCLEYLEAAPWAEEEEEKVASLLSELHLEGVAAGEVLKRVSTEATGLEDGNGNGNGNDNDNEELLLKLLHVVLEGKDEKARREMKGLVSKMLRESSSPNDLRKESLYAACDGCLQLLCHHFMRAVGSDFAGVGEIAKQADNLHWILDILIDRQIAEDFLRTWASQCELSAAHSKVPAVHRFEISRVTARLLVGIGKGQLLAPKDVRYQLLQTWLVPFYDDFGWMRRASRGFDRHLIEDGLSNTILTLPLAWQQDILLAWFNRFINSGEDCPNIQRGFEVWWRRAFSRRKGEQERPRPIRIATPSAQNS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8851318 8853338 + Carg16621-RA Car15g01121 162958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01121 646 ProSiteProfiles BTB domain profile. 236 305 IPR000210 GO:0005515
Car15g01121 646 SUPERFAMILY POZ domain 227 343 IPR011333 -
Car15g01121 646 MobiDBLite consensus disorder prediction 94 108 - -
Car15g01121 646 MobiDBLite consensus disorder prediction 1 22 - -
Car15g01121 646 MobiDBLite consensus disorder prediction 74 108 - -
Car15g01121 646 Gene3D Potassium Channel Kv1.1; Chain A 218 347 IPR011333 -
Car15g01121 646 PANTHER OSJNBA0011J08.25 PROTEIN 22 642 - -
Car15g01121 646 MobiDBLite consensus disorder prediction 1 50 - -
Car15g01121 646 MobiDBLite consensus disorder prediction 33 50 - -
Car15g01121 646 MobiDBLite consensus disorder prediction 74 93 - -
Car15g01121 646 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 22 642 IPR038920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01121 - - - csv:101215048 985.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g01202 Car15g01121 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00921 Car-Chr3:7247735 Car15g01121 Car-Chr15:8851318 2.25E-99 dispersed
Car07g00732 Car-Chr7:3773337 Car15g01121 Car-Chr15:8851318 1.07E-98 dispersed
Car07g00790 Car-Chr7:4149757 Car15g01121 Car-Chr15:8851318 6.47E-53 dispersed
Car11g00930 Car-Chr11:5935021 Car15g01121 Car-Chr15:8851318 3.15E-16 dispersed
Car15g01121 Car-Chr15:8851318 Car19g00507 Car-Chr19:6736137 1.99E-18 dispersed
Car15g01121 Car-Chr15:8851318 Car02g01202 Car-Chr2:8163386 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g22 . . . . . . . Bma14g00603 . . Cma02g01433 Cma15g01243 Car02g01202 Car15g01121 . . Cpe05g00353 . . . . . . . . . . . . . . Cone8ag0286 Cone12ag0291 . . . Csa05g00259 Chy09g01248 . . . . . . Bpe11g00664 . . . Cmo02g01468 Cmo15g01309 . . . . . Cpe13g00141 Bhi12g00292 . . Lac11g2066 Hepe06g1523 . . Cla01g00244 Cam01g0248 Cec01g0241 Cco01g0254 Clacu01g0246 Cmu01g0236 Cre09g2272 Lsi09g00234 . . Cme09g01783
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004050 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4871 None None None None Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01121 Car_Chr15 FPKM 34.937771 32.818722 35.967747 36.949051 40.464603 45.283649 41.595127 36.41095 35.920956 33.581928