Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01128 ATGTTTCCAGTTCGTAGATTGATGATGGCAGCTGCATCGAATTCTGTGTCGCTGAAGCACGGTCTCTCTCTCTGGTGTCCGCACTCTGGTTCCTTTTCTAGAGCTCAGCCGAAATCTTCTGTTTCTTTCAGATCTTTCCGGAGAAGCTACGTTGTTGCCTCCTCGGCTTTCGCTAACGAGAATAGAGAGTTTGTGATTGTTGGTGGTGGCAATGCTGCTGGTTATGCGGCTCGTACTTTCGTCGAGCACGGGATGGCGGATGGACGGCTTTGTATAGTAACTAAGGAGGCATTTGCGCCGTACGAGCGTCCGGCTCTGACAAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGATCTGGTGGGGAAAGACAAACGCCAGAATGGTACAAGGATAAAGGTATTGAGGTAATTGTCATCATATATTTTTTCATTTCCTTTTTTAAATTGTGGCTCCGAGCTTTGTCCATTGTGTACTCACTTTTCTTTGCCTTTCAGACATTTTATCAAGATCCAGTTACGGGTATTGACATAGAAAACCAAACCCTGAAAACTAATTCGGGAAAACTGCTCAAGTATGGAGCGCTTTTAATAGCAACAGGATGTACAGCCTCGAGATTTCCAGATAGAATTGGGGGTGGGCTACCGGGTGTTCACTACATCCGAGATGTTGCAGATGCAGATTCACTAATTTCCTCATTGGAGAAAGCAAAAAAGGTGGTTATTGTTGGTGGTGGTTACATTGGGATGGAGGTCGCTGCGGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCATCTATTGCAACGACTTTTTACTCCTTCGCTGGCCAGGAAATATGAAGAATTTTACCAGGAGAATGGTGTCAAATTCTTGAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAGATGGTCGGGTCTCTTCTGTTAGACTTGAGGATGGATCCTCCATTGAAGCAGACACGGTAGTAATAGGCATTGGTGCGAAGCCTGCTGTCAGTCCGTTTGAGCAAGTGGGATTGAATAGCACTGTTGGCGGCATACAGGTTGATGGCCTGTTCAGAACTAAGATACCAGGAATTTTTGCAGTTGGAGATGTGGCAGCATTCCCGTTAAAGCTGTATGATCGTGTAACTCGGGTCGAACATGTGGATCATGCTCGTCGATCGGCTCAGCATTGTGTCAAATCCTTACTAACTGCTCATACTCAAATATACGATTATCTTCCATACTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGGAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGTGAGACAGTCGAAATTGGGAACTTTGATCCTAAGATTGCTACTTTTTGGATTGATTCTGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGTCCGGAGGAATTTGAACTCCTTCCTAAACTTGCAAGATTCCAACCTTCTGTCGATAAAGCTAAACTTCAAAGTGCGTCTTCAGTCGAGGAAGCACTGGATATTGCCCGAGCATCCTTACAACAGGCTGGAGCTTCGGTTTGA 1590 44.72 MFPVRRLMMAAASNSVSLKHGLSLWCPHSGSFSRAQPKSSVSFRSFRRSYVVASSAFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKDKGIEVIVIIYFFISFFKLWLRALSIVYSLFFAFQTFYQDPVTGIDIENQTLKTNSGKLLKYGALLIATGCTASRFPDRIGGGLPGVHYIRDVADADSLISSLEKAKKVVIVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLARKYEEFYQENGVKFLKGASIKNLEAGADGRVSSVRLEDGSSIEADTVVIGIGAKPAVSPFEQVGLNSTVGGIQVDGLFRTKIPGIFAVGDVAAFPLKLYDRVTRVEHVDHARRSAQHCVKSLLTAHTQIYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFELLPKLARFQPSVDKAKLQSASSVEEALDIARASLQQAGASV 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8888612 8895104 + Carg16614-RA Car15g01128 162965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01128 529 Pfam Pyridine nucleotide-disulphide oxidoreductase 64 407 IPR023753 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01128 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - csv:101214011 882.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01128 Car-Chr15:8888612 Car16g00816 Car-Chr16:5376002 6.47E-100 dispersed
Car15g01128 Car-Chr15:8888612 Car14g00266 Car-Chr14:1266079 6.43E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01128 Car_Chr15 FPKM 5.905278 6.640657 7.823022 6.908774 8.804005 8.534593 7.422247 2.678904 2.33288 2.238624