Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01148 ATGATAACCCATCTCTCTTCTCTTCGTCAAGCTCCAACCTCCCTGTTTGTCTCAACTTTTACGAGTTCTTCTCCTTCACCGCCCAATGTCGGAGCAATCCCTCACCGGATTTCACTTGAGCGCCATCCTCTCAGAAACCGAAGCTTCATCAGTAGAAGAAACGGGATTATCTGTGCGGCAATCTTGCCTGTGGATCCATGGGCGCCCAACATCGATTCTCAGAGCGTAGCCTCACAGATCTTTGCCTTTTCCCTGTTTCCGTACATCGGTTTCTTGTACTTCATCACCAAATCAAAGACGGCTCCGAAGCTCACTCTCTTCGGATTCTATTTCTTGCTTGCCTTCGTTGGCGCTACCACAAAGGTTCAATATGGAACCTCCTTGTCTAATGTTGATTGGTTACATGGAGGGGCTGAATCGCTTCTCACTCTGACAAATCTATTCATTGTGTTGGGTTTGAGAGGAGCTCTTAGGAAGTATGAGAAGGATGAAATCTCTACTTCCTCCCCTGTTCTTGAGTTGGAGAAAGAGAAAGCTTAA 540 46.67 MITHLSSLRQAPTSLFVSTFTSSSPSPPNVGAIPHRISLERHPLRNRSFISRRNGIICAAILPVDPWAPNIDSQSVASQIFAFSLFPYIGFLYFITKSKTAPKLTLFGFYFLLAFVGATTKVQYGTSLSNVDWLHGGAESLLTLTNLFIVLGLRGALRKYEKDEISTSSPVLELEKEKA 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9037609 9038779 + Carg21272-RA Car15g01148 162985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01148 179 Pfam Protein of unknown function (DUF3593) 78 157 IPR021995 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01148 - - - csv:101210365 286.574
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g117 Blo02g01143 . . Bda08g00477 Bpe05g00685 . . Bma14g00556 . . . Cma15g01274 . Car15g01148 . . . . . . . . . . . . . . . . . . Cone12ag0602 . . . Csa05g00211 Chy09g01288 . . . Bda07g00462 . . Bpe11g00712 Bma05g00866 . . . Cmo15g01343 . . . . . Cpe13g00115 Bhi12g00156 . . Lac11g2008 . . Lcy12g1577 Cla01g00195 Cam01g0201 Cec01g0195 Cco01g0200 Clacu01g0197 Cmu01g0193 Cre09g2314 Lsi09g00183 . . Cme09g01832
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012286 1 2 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01148 Car_Chr15 FPKM 98.346451 104.583305 10.373896 10.387476 116.043518 119.258186 126.004547 1.611555 2.068279 1.967145