Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01153 ATGCAGAGGAAGTATCTATTTCAGGTGGAGGAGGGCAAGGAAGCCGCCGCCGGACGGCCGTCGGTCGGGCCGGTTTACCGGAGTGTTTTTGCTAAAGATGGGTTTCCTCCATCGGTTGAAGGCTTGGAAACCTGCTGGGATATATTTAGGTATGTATTTTTTCTGGTTTGTGCTGGTGCCATAGAATTCATAATATGCCATGCAGAGACTTCCATTGCTTTTGTAGAAGAGAAGAAGATCCCAGAGCTGTTGAAAACACTTCCCAACACAGCAAATGTTCTTAAAACACTTGTGAGCTTTGGGAAAGTTTCAAATAATCACAAGGAAGAAGTTAACAAGTTTGGTTTGGAAATATATTCTTGGGAAGAGTTTCTGCAAAAGGGAGATAGCCAACAATATGATCTTCCAGTGAAAGGGAAAGGTGATATTTGCACTATCATGTATACCAGTGGAACAACTGGTGATCCCAAAGGAGTGCTATTATCCAATAAAGCCATTATAGCTCTTATAGCTGGTGTCAAACATTTGCTTGCAACTGTTAAGGAAGAGGTTCAAGAAAACGATGTTTACATATCATATCTTCCACTCGCGCATATCTTCGACCGGGTGATCGAGGAGGTGTTTATTTTGAATGGTGCCTCCATTGGATTCTGGCGTGGGGATGTGAAATTGTTAGTTGAAGACATTGGAGAGTTGAAACCAACTATCTTCTGTGCAGTTCCTCGTGTTCTTGAAAGAATTTATGGTGCCACACTCTTTGATAAACTGGTCTTTGACAAGGTGAAGAAGGGATTAGGAGGAAAAGTTCGAATCATTTTATCTGGAGCAGCCCCGCTCGCAGCTCATATCGAAACGTTCTTTCGAGTTGTATCGTGTGCTCATGTTCTACAAGGATATGGTTTGACAGAAACTTGTGGTGGAACTTTTGTTACACTACCAAATGAATTGCGAATGTTGGGAACAGTAGGTCCTCCAGTGCCTAATGTTGATATCTGTCTCGAATCAGTACCCGAAATGGGGTACGATTCGCTCGCTAGCACGCCTCGAGTCGAAAATCTAGAGCTGATCTATGGCCTTGTTTCCGACATCGAAATGCTAAAAGGTTACGAAGTTATCAAAGCGGTTCATCTCGATCCCCTTCCGTTCGATATAGAGCGTGACCTTCTTACTCCATCGTTTAAGAAGAAGAGACCACAAATGCTCAAATACTATCAGGTTCTTCTTGATTACCTTCATAGTATTACTTTACACTAA 1254 42.58 MQRKYLFQVEEGKEAAAGRPSVGPVYRSVFAKDGFPPSVEGLETCWDIFRYVFFLVCAGAIEFIICHAETSIAFVEEKKIPELLKTLPNTANVLKTLVSFGKVSNNHKEEVNKFGLEIYSWEEFLQKGDSQQYDLPVKGKGDICTIMYTSGTTGDPKGVLLSNKAIIALIAGVKHLLATVKEEVQENDVYISYLPLAHIFDRVIEEVFILNGASIGFWRGDVKLLVEDIGELKPTIFCAVPRVLERIYGATLFDKLVFDKVKKGLGGKVRIILSGAAPLAAHIETFFRVVSCAHVLQGYGLTETCGGTFVTLPNELRMLGTVGPPVPNVDICLESVPEMGYDSLASTPRVENLELIYGLVSDIEMLKGYEVIKAVHLDPLPFDIERDLLTPSFKKKRPQMLKYYQVLLDYLHSITLH 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9061653 9068537 - Carg21277-RA Car15g01153 162990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01153 417 Pfam AMP-binding enzyme 59 337 IPR000873 -
Car15g01153 417 ProSitePatterns Putative AMP-binding domain signature. 146 157 IPR020845 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01153 K01897 ACSL, fadD; long-chain acyl-CoA synthetase [EC:6.2.1.3] - csv:101209130 524.628
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00659 Car15g01153 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01153 Car-Chr15:9061653 Car20g00756 Car-Chr20:4428893 2.49E-13 dispersed
Car15g01153 Car-Chr15:9061653 Car16g00488 Car-Chr16:3121671 4.55E-17 wgd
Car15g01153 Car-Chr15:9061653 Car02g00659 Car-Chr2:4942941 2.63E-16 wgd
Car15g01153 Car-Chr15:9061653 Car04g00638 Car-Chr4:3646605 5.37E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g131 Blo02g01149 . . Bda08g00466 Bpe05g00693 . Bma07g01684 Bma14g00634 . Cmo16g00598 Cma02g00909 Cma15g01279 Car02g00659 Car15g01153 . Cpe14g00463 Cpe05g00800 . . . . . . . Cla07g01425 Cam07g1526 Cec07g1622 Cco07g1582 Clacu07g1514 Cmu07g1484 Cre07g1861 . . Cone6ag0850 Cone9ag0851 . Csa05g00204 Chy09g01293 . . Blo19g00366 Bda07g00457 Bda09g00015 Bpe08g01517 Bpe11g00634 Bma05g00876 . . Cmo02g00916 Cmo15g01348 . Cma16g00546 . . . Cpe13g00110 Bhi12g00146 . . Lac11g1994 Hepe06g1479 . Lcy12g1570 Cla01g00188 Cam01g0193 Cec01g0188 Cco01g0193 Clacu01g0189 Cmu01g0185 Cre09g2322 Lsi09g00176 Csa04g00656 Chy07g01155 Cme09g01839
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001440 4 3 3 2 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01153 Car_Chr15 FPKM 4.141278 4.396845 19.288317 19.037224 110.018486 119.764595 105.030792 17.119141 16.519333 16.941305