Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01176 ATGGATACTTCTCAATGGCCACAGGAGATTTTGATGAAACCCATTGAAGAAATTGTGGCAAACACTTACCCAAAACAAGGAGTTTCAAGTTTAGAGAGAAAAATTAGACCCCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAATACAAAGTTTTGTTATTACAATAATTATAGCCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGAAACATTCCTGTTGGAGGTGGCTCAAGGAAGAACAAGAGACCTTCTTCACAAAACAAAGTTCTTGATCTCCCACAAAACCCTAATTCCGTCTCTTCCGAGACCGTTCTCGTCGGTCGTAACCCTTCGACGATTGATGTCACGACGAATCACCTCTCGGCGATGGAGCTTCTCACCGGGATGACGAACAAGAACTCTAGAGACTTGAATTGTTTTCTTCCAATGCCTTCCATCGTCCCTGATCCTCGCTCCGTTTACACGACCGGGTTTCCCGATCTCCACGAGCCATTTAAACCAAGCCTTGGATTCTCTCTTGATGGGTATGGAGTCATCCCGACCGAGGTCCGCAATGGGGACGGGAGGGCGATGCAGCTGCCATTGTTTGAAGATTTGAAGCAAGGAGAGTCTAATGGAGTTGAGCAAGGCAAAGAACAAGGAGATTCAAATGGGTATTGGAGTGGGATGTTGAGTGGAGCATCATGGTAA 735 45.03 MDTSQWPQEILMKPIEEIVANTYPKQGVSSLERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSQNKVLDLPQNPNSVSSETVLVGRNPSTIDVTTNHLSAMELLTGMTNKNSRDLNCFLPMPSIVPDPRSVYTTGFPDLHEPFKPSLGFSLDGYGVIPTEVRNGDGRAMQLPLFEDLKQGESNGVEQGKEQGDSNGYWSGMLSGASW 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9192432 9193456 + Carg21300-RA Car15g01176 163013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01176 244 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Car15g01176 244 MobiDBLite consensus disorder prediction 220 244 - -
Car15g01176 244 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Car15g01176 244 MobiDBLite consensus disorder prediction 221 244 - -
Car15g01176 244 MobiDBLite consensus disorder prediction 88 117 - -
Car15g01176 244 MobiDBLite consensus disorder prediction 94 117 - -
Car15g01176 244 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01176 - - - cmax:111469087 490.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00682 Car15g01176 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00628 Car-Chr2:4734325 Car15g01176 Car-Chr15:9192432 8.14E-39 dispersed
Car02g00938 Car-Chr2:6642547 Car15g01176 Car-Chr15:9192432 4.96E-41 dispersed
Car08g00121 Car-Chr8:722759 Car15g01176 Car-Chr15:9192432 1.02E-39 dispersed
Car14g01920 Car-Chr14:14729236 Car15g01176 Car-Chr15:9192432 9.78E-38 dispersed
Car15g00949 Car-Chr15:6917930 Car15g01176 Car-Chr15:9192432 7.37E-50 dispersed
Car15g01176 Car-Chr15:9192432 Car16g00033 Car-Chr16:263121 4.48E-39 dispersed
Car15g01176 Car-Chr15:9192432 Car02g00682 Car-Chr2:5080066 5.78E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g209 . . . . . . . . . . Cma02g00866 Cma15g01306 Car02g00682 Car15g01176 . . . . . . . . . . . . . . . . . . . . . . Csa05g00030 Chy09g01317 . . . Bda07g01944 . . . . . . Cmo02g00942 Cmo15g01373 . . . . . . Bhi12g00102 . . Lac11g1945 Hepe06g1450 . Lcy12g1540 Cla01g00159 Cam01g0165 Cec01g0162 Cco01g0166 Clacu01g0161 Cmu01g0160 Cre09g2346 Lsi09g00151 . . Cme09g01866
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 5.4e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 2.8e-41 165.6
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.0e-40 161.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.0e-40 161.8
Car15g01176 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.3e-39 160.2
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 5.3e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-41 166.8
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.8e-38 154.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.4e-37 152.5
Car04g02541 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 67.4 9.9e-40 161.4
Car14g00128 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 1.9e-38 157.1
Car06g00263 CCT,CST,ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.7e-37 153.3
Car01g00540 CCT,CST,ECH 55 129 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 58.9 7.8e-37 151.8
Car13g00103 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Car15g01176 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 74.0 6.0e-40 162.2
Car06g00758 . 87 222 C2C2-Dof Transcription Factor Family AT5G39660 56.9 3.4e-38 156.8
Car01g00540 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 9.1e-40 161.8
Car13g00103 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.5e-37 154.5
Car03g00379 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Car03g00379 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.1e-37 152.5
Car11g00205 CCT,CST 26 315 C2C2-Dof Transcription Factor Family AT5G60850 51.3 1.4e-48 190.7
Car10g00264 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 9.2e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4875 PF02701 zf-Dof 3.60E-33 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01176 Car_Chr15 FPKM 3.282915 3.558961 1.972054 2.143323 13.575164 14.191371 13.800817 1.593762 1.48236 1.272204