Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01176 ATGGATACTTCTCAATGGCCACAGGAGATTTTGATGAAACCCATTGAAGAAATTGTGGCAAACACTTACCCAAAACAAGGAGTTTCAAGTTTAGAGAGAAAAATTAGACCCCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAAGCAATACAAAGTTTTGTTATTACAATAATTATAGCCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGAAACATTCCTGTTGGAGGTGGCTCAAGGAAGAACAAGAGACCTTCTTCACAAAACAAAGTTCTTGATCTCCCACAAAACCCTAATTCCGTCTCTTCCGAGACCGTTCTCGTCGGTCGTAACCCTTCGACGATTGATGTCACGACGAATCACCTCTCGGCGATGGAGCTTCTCACCGGGATGACGAACAAGAACTCTAGAGACTTGAATTGTTTTCTTCCAATGCCTTCCATCGTCCCTGATCCTCGCTCCGTTTACACGACCGGGTTTCCCGATCTCCACGAGCCATTTAAACCAAGCCTTGGATTCTCTCTTGATGGGTATGGAGTCATCCCGACCGAGGTCCGCAATGGGGACGGGAGGGCGATGCAGCTGCCATTGTTTGAAGATTTGAAGCAAGGAGAGTCTAATGGAGTTGAGCAAGGCAAAGAACAAGGAGATTCAAATGGGTATTGGAGTGGGATGTTGAGTGGAGCATCATGGTAA 735 45.03 MDTSQWPQEILMKPIEEIVANTYPKQGVSSLERKIRPQKEQALNCPRCNSSNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSQNKVLDLPQNPNSVSSETVLVGRNPSTIDVTTNHLSAMELLTGMTNKNSRDLNCFLPMPSIVPDPRSVYTTGFPDLHEPFKPSLGFSLDGYGVIPTEVRNGDGRAMQLPLFEDLKQGESNGVEQGKEQGDSNGYWSGMLSGASW 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9192432 9193456 + Carg21300-RA Car15g01176 163013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01176 244 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Car15g01176 244 MobiDBLite consensus disorder prediction 220 244 - -
Car15g01176 244 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Car15g01176 244 MobiDBLite consensus disorder prediction 221 244 - -
Car15g01176 244 MobiDBLite consensus disorder prediction 88 117 - -
Car15g01176 244 MobiDBLite consensus disorder prediction 94 117 - -
Car15g01176 244 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00682 Car15g01176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00628 Car-Chr2:4734325 Car15g01176 Car-Chr15:9192432 8.14E-39 dispersed
Car02g00938 Car-Chr2:6642547 Car15g01176 Car-Chr15:9192432 4.96E-41 dispersed
Car08g00121 Car-Chr8:722759 Car15g01176 Car-Chr15:9192432 1.02E-39 dispersed
Car14g01920 Car-Chr14:14729236 Car15g01176 Car-Chr15:9192432 9.78E-38 dispersed
Car15g00949 Car-Chr15:6917930 Car15g01176 Car-Chr15:9192432 7.37E-50 dispersed
Car15g01176 Car-Chr15:9192432 Car16g00033 Car-Chr16:263121 4.48E-39 dispersed
Car15g01176 Car-Chr15:9192432 Car02g00682 Car-Chr2:5080066 5.78E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4875 PF02701 zf-Dof 3.60E-33 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01176 - - cmax:111469087 490.345