Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01198 ATGTCCGCCACCGCCAAACTGCTTGTCGCCGATCTCGCTTCCACCGTCCACCAACTCCCTTCCCGCTTCGTCCGCCCCATCGACGACCGTCCAAACTTCTCCCATGTCCGAGCTCCGACCGGCTACTCTTTCCCTGTCATTGACCTCCACAACCTCCACGGCCCCTCTCGTGCTGATGTCGTCGCCCAAATTGGCCAAGCCTGTGAGCGCGACGGTTTCTTTCTGGTGAAGAACCATGGGGTGCCGGAGGAGATGATGAATGGGATGCTGAGATTGGCTAGGGAGTTTTTCCGGCTGCCGGAGTGTGAGAGACTTAAGAGCTATTCCGATGATCCGACGAAGACGACGAGGCTTTCGACGAGTTTCAATGTGAAGACGGAGAAGGTGGCAAATTGGAGAGATTTCTTGAGACTCCATTACTCCATAGCCAATTCAATTGGAGGCCATGGCCAACACATGGCCTTGAACTACTATCCGCCATGTCCACAGCCAGAGCTCACCTATGGCTTACCCGGCCACACCGACCCGAACCTCATCACTCTCCTCCTCCAAGACCAAGTCCCCGGCCTCCAAGCCCTCCACGACAACACTTGGTTCGCTCTCGACCCCATCCCTAACACCTTTATAATTAACATCGGCGATCAAATGCAGGCGTTGAGTAATGACAGATACAAGAGCGTGCTTCATCGAGCTGTTGTGAATAGTGAAACGGAGCGAATTTCGATCCCGACATTTTATTGTCCGTCGCAGGATGCGATGATCGGGCCGTTTAAGGAGCTGGTCGACGACAAGAATAGAGCGGTGTATAGACAATTTACTTATTCAGAATATTACAAGACGTTTTGGAATGAAGGACTTGCAACCAAAAGATGCTTAGATTTGTTTAGAGTTGAATGA 897 51.84 MSATAKLLVADLASTVHQLPSRFVRPIDDRPNFSHVRAPTGYSFPVIDLHNLHGPSRADVVAQIGQACERDGFFLVKNHGVPEEMMNGMLRLAREFFRLPECERLKSYSDDPTKTTRLSTSFNVKTEKVANWRDFLRLHYSIANSIGGHGQHMALNYYPPCPQPELTYGLPGHTDPNLITLLLQDQVPGLQALHDNTWFALDPIPNTFIINIGDQMQALSNDRYKSVLHRAVVNSETERISIPTFYCPSQDAMIGPFKELVDDKNRAVYRQFTYSEYYKTFWNEGLATKRCLDLFRVE 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9316624 9318693 - Carg21322-RA Car15g01198 163035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01198 298 Pfam non-haem dioxygenase in morphine synthesis N-terminal 45 145 IPR026992 -
Car15g01198 298 Pfam 2OG-Fe(II) oxygenase superfamily 151 248 IPR044861 -
Car15g01198 298 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 149 248 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01198 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - csv:101209949 463.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00766 Car15g01198 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01198 Car-Chr15:9316624 Car16g00015 Car-Chr16:195248 2.24E-95 dispersed
Car15g01198 Car-Chr15:9316624 Car14g00226 Car-Chr14:1062745 6.15E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
Vvi16g543 Blo06g01106 Blo15g00151 . Bda07g01842 Bpe03g00103 Bpe07g00958 . Bma14g02103 Cmo16g00166 Cmo18g01230 Cma02g01021 Cma15g01393 Car02g00766 Car15g01198 Sed01g3661 Cpe05g00697 . Bhi01g01390 Tan01g0319 Cmetu06g2554 . . Mch10g0206 . Cla01g00518 Cam01g0540 Cec01g0533 Cco01g0558 Clacu01g0539 Cmu01g0512 Cre09g1997 Cone1ag1118 Cone5ag0829 Cone14ag0128 Cone15ag0135 Lsi05g01281 Csa05g00556 Chy09g00956 Cme06g00945 . Blo09g00122 . Bda15g00747 . Bpe12g00406 . Bma12g01139 . Cmo02g01036 Cmo15g01459 Cma16g00162 Cma18g01209 . . Cpe09g00121 . Bhi12g00742 . . . Hepe06g1317 . Lcy12g1149 Cla05g00831 Cam05g0916 Cec05g0920 Cco05g0923 Clacu05g0904 Cmu05g0861 Cre05g0948 Lsi09g00562 Csa03g01660 Chy06g00894 Cme09g01477
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01198 Car_Chr15 FPKM 1.04878 0.203349 0.748118 0.471473 0.0 0.0 0.118235 0.290277 0.235513 0.259182