Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01210 ATGGCAAGGGCGGGAGTGTCAATGAGGAAGCTGTATGCGCCGTGTGCAGCAATGGTGTTGGTGTATATTGCGTATGGCGGATCCCACATTCTGGTGAAGATCGCTAGCGACAAGGGTCTTAACCCTTTGGTCTTCATCGTTTATCGCCATTTCATAGCCTTCCTCGTCTTGGCTCCTTTTGCTTATCTCATCGACAGAAACAAACCAACGTCTCTCACGATTTCGATGACGATAAACATCTTTTTGCTCGCAATCTTAGGCTCAACGATTCACCTGAATCTATTCTACGCTGGAATTAGCTATACTTCGCCTATAGTAACTTCTACTTTCAGCAACATCATTCCAAGCTTGACATTTGTCATGGCTGTTCTATTTCGATTGGAGAGAGTGAATATCAAAACTGCGAGAGGTGGTGCTAAAGTGTTGGGGACGATTATGTGCATCGGTGGCTCCTTTGTTTTCACGTTTTGGAAAGGACCATATGTAACCAAAGGCATCTTCAAGGAGCCACTCATAGACGTGTACAAGAATCAAGGCTGTGGACATAGGAGTGGCGAGGATTGGATAAAGGGCTCGGCTTTGATTGTTGTAAGTGAGGTTGCTTGGAGTGCATGGCTAATTTTATTGACATTGGTCACTAGAAAATACCCAGCACAATTGACCATTACTGTTTTAATTTGCTTGTTTGCAACTGCACAATCTGGCTTCCTTGCCTTGATCTTTGCTAGAGATTTAGAAAAATGGAAGCTACACTGGGATGCACGGCTGTTAACCATCGTATATTGTGGCGTTGTGATTTCGGGCGCGGGGTATTTCCTACAAACTTGGTGCATCAGCCGCAACGGGCCTGTTTTTACTTCAATGTTTAATCCCCTAATGCTGATATTCGTGGCCATATTCTCAGCATTTGTGTTCTCAGAGCGGCTTCACGTGGGCAGCCTGGTAGGAGCTTTCCTTATCATACTGGGTCTGTACTTGGTGCTGTGGGGTAAGAAGGCAGATCATGAGGTTGCACCTGAACCGTAG 1026 45.52 MARAGVSMRKLYAPCAAMVLVYIAYGGSHILVKIASDKGLNPLVFIVYRHFIAFLVLAPFAYLIDRNKPTSLTISMTINIFLLAILGSTIHLNLFYAGISYTSPIVTSTFSNIIPSLTFVMAVLFRLERVNIKTARGGAKVLGTIMCIGGSFVFTFWKGPYVTKGIFKEPLIDVYKNQGCGHRSGEDWIKGSALIVVSEVAWSAWLILLTLVTRKYPAQLTITVLICLFATAQSGFLALIFARDLEKWKLHWDARLLTIVYCGVVISGAGYFLQTWCISRNGPVFTSMFNPLMLIFVAIFSAFVFSERLHVGSLVGAFLIILGLYLVLWGKKADHEVAPEP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9446730 9448779 + Carg20797-RA Car15g01210 163047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01210 341 Pfam EamA-like transporter family 17 149 IPR000620 GO:0016020|GO:0016021
Car15g01210 341 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01210 - - - cmax:111469060 538.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00227 Car-Chr5:1189261 Car15g01210 Car-Chr15:9446730 5.21E-79 dispersed
Car06g00703 Car-Chr6:4281335 Car15g01210 Car-Chr15:9446730 2.37E-37 dispersed
Car11g01025 Car-Chr11:7454083 Car15g01210 Car-Chr15:9446730 1.32E-65 dispersed
Car15g01208 Car-Chr15:9384814 Car15g01210 Car-Chr15:9446730 4.03E-39 dispersed
Car15g01207 Car-Chr15:9375172 Car15g01210 Car-Chr15:9446730 3.18E-134 proximal
Car15g01209 Car-Chr15:9407144 Car15g01210 Car-Chr15:9446730 8.66E-63 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g292 . . . . . . . . . . . . . Car15g01210 . . . . . . . . . . . . . . . . . Cone8ag0576 . . . . . . . . Blo19g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012233 3 0 0 1 0 0 4 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 3 1 2 1 0 2 1 4 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01210 Car_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0