Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01216 GTGGGAGCAGAATTTGTGGGCACATTCATCCTCATATTTGCTGCAACAGCCGCACCGATCATCAACCAAAAGTACAACAACATCACCTCTCTAATCGGAAACGCAGCATCCTCCGGCCTAGCGGTGATGATCGTAATTCTGTCGACGGGACACATCTCCGGCGCCCACCTGAACCCCTCACTCACCATCGCCTTAGCCGCCATCCGCCACTTCCCTTGGGTTCAAGTCCCTGCCTACCTCACCGCCCAAATCTCCGCCTCCATATGCGCCTCTTTCACTCTCAAAGGTATCTTTCACCCTTTCATGTCCGGCGGCGTTACAGTTCCCTCCGTCGGCACCGGCCAAGCCTTTGCTCTTGAATTCCTCATTGCCTTCAATCTCTTGTTCGTGGTCACTGCTGTCACTACTGATCCTCGCGTTGTTAGAGAGATGGCCGGAATTGCCGTCGGAGCTACCGTGATGCTCAACATTCTTATCGCAGGGTCGTCCACCGGTGGTTCAATGAACCCAGTGCGGACTCTTGGCCCCGCCGTGGCCGCCGGAAATTACAGAGGGCTGTGGGTGTACATGGTGGCTCCTATACTTGGGGGGATTGTCGGTGCCGGAACCTACTCTGCCATGAGAATCAAAGATGATGAAATGGATGTTCCGCAGCACGTGAGGAGCTTCGGTCAGTACACGGGTGGCAACTGTGTTCGTGTTTAA 705 54.75 VGAEFVGTFILIFAATAAPIINQKYNNITSLIGNAASSGLAVMIVILSTGHISGAHLNPSLTIALAAIRHFPWVQVPAYLTAQISASICASFTLKGIFHPFMSGGVTVPSVGTGQAFALEFLIAFNLLFVVTAVTTDPRVVREMAGIAVGATVMLNILIAGSSTGGSMNPVRTLGPAVAAGNYRGLWVYMVAPILGGIVGAGTYSAMRIKDDEMDVPQHVRSFGQYTGGNCVRV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9490964 9491797 - Carg20803-RA Car15g01216 163053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01216 234 ProSitePatterns MIP family signature. 56 64 IPR022357 -
Car15g01216 234 Pfam Major intrinsic protein 3 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00717 Car15g01216 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00157 Car-Chr1:793675 Car15g01216 Car-Chr15:9490964 1.43E-106 dispersed
Car04g00580 Car-Chr4:3309905 Car15g01216 Car-Chr15:9490964 2.19E-95 dispersed
Car11g00859 Car-Chr11:5293933 Car15g01216 Car-Chr15:9490964 2.13E-66 dispersed
Car14g00533 Car-Chr14:2914833 Car15g01216 Car-Chr15:9490964 4.36E-21 dispersed
Car15g01216 Car-Chr15:9490964 Car02g00717 Car-Chr2:5325534 4.45E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01216 K09874 - csv:101212651 364.385