Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01221 ATGGAGGGGATGGAAGAGGAAGCCGATCTTATTTCACTGCCTTCCCCTTCTCCAGTTGTAGCTGTTGCTATCAGTGGGAAGAAGAACAGTAGATATATAATTAGATGGTCGTTGGAAAAGTTTCTACCTGAGGGCATCATTAATTTCAAGCTGCTACATGTCACCCCGAGGATTACTACTGTCCCAACTCCAATGGGAAATTCAATTCCAGTTTCACAAGTTCGTGACGATGTCGCTGCAGCTTATAGGAAAGAAATCGGGTGGCAGACGAACGAAAAGCTTCTTCCATACACGAAGATGTTTGCTCAGAGAAAGGTTCAACTTGATGTTGTTACTCTTGAAGCAGATGATGTAGCAAATGCAATCATAGAAGAGGTCACAAAGTGTTCAATCAGCAAGCTTGTTATAGGAGTTTCATCACAGGGTTTTTTCTCAAGGAAACTAAATGGTCTATCCTCAAGAATATCAGCACTTGCACCAAGACATTGTACAGTCTATGCTATTTCAAAAGGACAATTAGCCTCAATACGGCCGCCTGATATGGAGACAAACGTGAGCATTAAAGATGATGCGAGTGAATCAAGCTCTGCAAATAGCTACTTGAGCTATTCATCCAGCTCAGTTACTGATAGCAGTTCGAGCTTAACTACGTCCTACTCCGATTTCCCTTCTTCTTCCCCGTCCCTACCGTTACAACGATTTCAAGCTCTTTCAACCATCAACCAGACTCTTCTTACGACGAAATCAAGCCCCATTAAAGCTGACCATTCTAGATGTCAATCTGTTGATATTGAGGATCAGGTGGATGGCGTTCGTTCTTCTTCCTATGTTTCGGATTGCGTACGAACATTGAGTCGGGACTCTAGCTGTAGAAGTTTGCCGATGGATGGCCAATCTTGGGTTGATGAAGCTTCGTCCTCGGGCGCGTTCGGTGATCATGTTTCATGTGAAAGTCAGACGGATGTCAACTTTGAGCTTGAAAAGTTGAGAATCAAACTAAGACATGCGAGAGGAATGTACGCAATCGCTCAACGAGAGACGATCGATGCCTCTCGAAAGCTGAACCATCTAAATAAACAACGATCCGAGGACGCTAGGAAGCTCGACGAGATCAAGAACAGAGAGGTGGCTGCCAAAGAATTTGCAAGGGAAGAGAGAACGAAGCGTGAAGCTTTAAGAAGAGAAGCAAAGTACGTAAAAGAACGCGCCGAAAGAGAAGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAAGATGCCAAAGAGAAAGGAAAGCATGAGAATGCTCTTGAAGGACCTCTGCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCTGCAACATCATCTTTCTCAGAGGATCTTAAGCTTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTACATCATACAACTGTAGCAGTAAAGGTTCTTCATTCTAGAGATGATCACAAAAAGACCCAATTTCTTCAGGAGCTCGAAATCTTGAGCAAAATCCATCATCCTCATCTACTACTCCTCCTCGGTGCATGTCCGGACATGAACTGTCTGGTTTATGAATACATGGAAAATGGTAGCTTGGAGGATAGGTTATACTGCAGAGGCAATACTCCTGCAATTCCATGGTATGAGAGATTCCGAATAGCTTGGGAAATAGCCTCAGCTCTCGTCTTTCTTCACAGCTCAAAACCAAAACCGATAATCCACCGTGATCTTAAGCCAGCAAACATATTACTCGACCGGAACCTCGTGAGCAAAATCGGCGACGTCGGTCTATCTACCGTGTTCAACTCGGACCCATTAATGTCTACTGCATTCAAGAACAGTGGACCTGTTGGGACTCTCTGTTACATTGATCCCGAGTATCAACGAAGCGGATTAATCTCGCCGAAGTCTGATGTGTATGCTTTTGGAATGGTAATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCAGTTTAGATAAGGTTCTGGATATAGAGGCTGGACATTGGCCGGTGGAAGAAACATATGAACTAGCAAGATTAGGACTTCACTGTGCAGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGATCATGTGCTTCCCTTGTTGCTGACACTGAAAAAGGTTGCTGATGAGGCTCGAAGTTTGGCCTCGAAACTTCCAGCTCCGATTCCTAATCATTTCATCTGTCCAATTCTTCAGGACGTGATGAATGACCCGTGTGTAGCAGCGGATGGATACACATACGATCGTTGGGCGATCGAGAAGTGGCTACAAGAGAACGATAACTCACCGATCACGAAGTTGCCATTGTCAGATAAGAATTTGATACCAAATTTCAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAGAAAAAACTGA 2421 44.03 MEGMEEEADLISLPSPSPVVAVAISGKKNSRYIIRWSLEKFLPEGIINFKLLHVTPRITTVPTPMGNSIPVSQVRDDVAAAYRKEIGWQTNEKLLPYTKMFAQRKVQLDVVTLEADDVANAIIEEVTKCSISKLVIGVSSQGFFSRKLNGLSSRISALAPRHCTVYAISKGQLASIRPPDMETNVSIKDDASESSSANSYLSYSSSSVTDSSSSLTTSYSDFPSSSPSLPLQRFQALSTINQTLLTTKSSPIKADHSRCQSVDIEDQVDGVRSSSYVSDCVRTLSRDSSCRSLPMDGQSWVDEASSSGAFGDHVSCESQTDVNFELEKLRIKLRHARGMYAIAQRETIDASRKLNHLNKQRSEDARKLDEIKNREVAAKEFAREERTKREALRREAKYVKERAEREGIYRKEAETKALQDAKEKGKHENALEGPLQQYQHFQWEDIVSATSSFSEDLKLGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKTQFLQELEILSKIHHPHLLLLLGACPDMNCLVYEYMENGSLEDRLYCRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDRNLVSKIGDVGLSTVFNSDPLMSTAFKNSGPVGTLCYIDPEYQRSGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCSLDKVLDIEAGHWPVEETYELARLGLHCAEMQRKDRPDLKDHVLPLLLTLKKVADEARSLASKLPAPIPNHFICPILQDVMNDPCVAADGYTYDRWAIEKWLQENDNSPITKLPLSDKNLIPNFSLLSAIVEWNSRKN 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9532359 9541283 + Carg20809-RA Car15g01221 163058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01221 806 Coils Coil 354 374 - -
Car15g01221 806 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Car15g01221 806 ProSiteProfiles U-box domain profile. 735 806 IPR003613 GO:0004842|GO:0016567
Car15g01221 806 Coils Coil 326 346 - -
Car15g01221 806 ProSiteProfiles Protein kinase domain profile. 453 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g01221 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Car15g01221 806 Pfam Protein tyrosine and serine/threonine kinase 458 709 IPR001245 GO:0004672|GO:0006468
Car15g01221 806 Pfam U-box domain 736 805 IPR003613 GO:0004842|GO:0016567
Car15g01221 806 Coils Coil 382 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01849 Car-Chr14:14344847 Car15g01221 Car-Chr15:9532359 2.08E-103 dispersed
Car15g01221 Car-Chr15:9532359 Car09g00466 Car-Chr9:2597386 1.98E-137 dispersed
Car18g01163 Car-Chr18:11394110 Car15g01221 Car-Chr15:9532359 2.02E-79 dispersed
Car05g01319 Car-Chr5:12036601 Car15g01221 Car-Chr15:9532359 9.69E-91 transposed
Car15g01221 Car-Chr15:9532359 Car02g00722 Car-Chr2:5353134 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89411 PF07714 PK_Tyr_Ser-Thr 7.60E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01221 - - csv:101217665 1318.14