Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01232 ATGCCTTTCTCCAAAGCTTTAGCCTATATTCTCGTCGCCACGGCCCTGATCGTTGCTGGACCGACAACGGCGCAGCTGAGCCCGACGTTCTACGACGCGAGATGCCCGAACTTATCCTCCATTGTCGAAGATGTCGTGAGACAAGCTCTCCTAACCGATGCCCGAGCAGGCGCCAAACTCATTCGCTTCCATTTCCACGACTGCTTTGTTAACGGATGTGATGGGTCGGTTCTACTAATAGATTCCGTTGAAGACAACATCGATAGTGAACAGAATGCAGCGGGAAACCAAGGGATACAAGGCGAAAATATCGTTAACGATATCAAAACAGCCGTTGAAAATGCATGCCCGAATCTCGTCTCGTGTGCTGACATCTTAGCTATTGCGTCGAATTCAGCTGTCGTTTTGGCTGGAGGAAGAGGCTGGGAGGTTCAGCTGGGAAGAAGAGACAGTAGAGAAGCAAATAGATCTGGAGCTGTAAGCAACCTCCCCAGTCCTTTTGAACCTCTTGCAAATCTCACCGTCAAATTCGCCAACGTCGGTCTCAATTCCACCGACCTCGTTGCTTTATCGGGAGCGCACACGTTTGGGCGTTCAAGGTGCATATTCTTCAGCAGGCGATTAACCAACTTTAGCGGGTCGGGGCTTCCCGATCCGACTCTAGAGGCAGCCTACCGGGAGACCCTGATCGAGGCATGTCCTGCAGGCGGCGACAACAACCGGATCGACCTGGATCCGACGACTCCAGACGAATTCGACAAGAACTATTTCACGAATCTCCAAGCCAACCGGGGGCTTCTCACCAGCGACCAGGTGCTGTTCTCCACCGACGGCGCCGACACCATCGAGATTGTGAACCGGTTTGCGGCCAGCCAAGAAGCGTTCTTTGATGGGTTTGGAGCGTCCATGATCAAGATGGGGAATATTCGGCCGTTGACTGGAACTGATGGGGAGATTCGTTTGACTTGTACTCGGGTCAATCCTTTGCCGGCTGTGGCAGATATGTAA 1008 52.58 MPFSKALAYILVATALIVAGPTTAQLSPTFYDARCPNLSSIVEDVVRQALLTDARAGAKLIRFHFHDCFVNGCDGSVLLIDSVEDNIDSEQNAAGNQGIQGENIVNDIKTAVENACPNLVSCADILAIASNSAVVLAGGRGWEVQLGRRDSREANRSGAVSNLPSPFEPLANLTVKFANVGLNSTDLVALSGAHTFGRSRCIFFSRRLTNFSGSGLPDPTLEAAYRETLIEACPAGGDNNRIDLDPTTPDEFDKNYFTNLQANRGLLTSDQVLFSTDGADTIEIVNRFAASQEAFFDGFGASMIKMGNIRPLTGTDGEIRLTCTRVNPLPAVADM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9586867 9588934 + Carg20820-RA Car15g01232 163069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01232 335 Pfam Peroxidase 42 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 ProSiteProfiles Plant heme peroxidase family profile. 25 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 Gene3D Peroxidase, domain 2 164 306 - -
Car15g01232 335 SUPERFAMILY Heme-dependent peroxidases 25 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Car15g01232 335 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car15g01232 335 PANTHER PEROXIDASE 58 17 327 - -
Car15g01232 335 CDD secretory_peroxidase 25 326 IPR033905 GO:0004601|GO:0042744
Car15g01232 335 Gene3D - 30 327 - -
Car15g01232 335 PANTHER PEROXIDASE 72-RELATED 17 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01232 Car-Chr15:9586867 Car20g00038 Car-Chr20:206365 1.72E-71 dispersed
Car20g00040 Car-Chr20:229794 Car15g01232 Car-Chr15:9586867 4.64E-30 dispersed
Car15g01232 Car-Chr15:9586867 Car02g01006 Car-Chr2:7084113 1.07E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01232 K00430 - csv:101215530 544.658