Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01239 ATGGCCCCTACTTCCCTGGCTTATCGCTTCCGACAATCCGTTGCCCCGACCGCCCTCCGATCCTACGCTGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCCGTCGTTGGAGCATCAATCGCCTCCCGGAAGTTTGTGCCCGGGGCTGCTGCAACCGACCCATCGAGCCTTTTGGTGGCGGCTATTGCTAATGCCTTTGCTTTGGCCTCAGCCATTTACATTGCTGCCAACGTCTCCGGCGGACATGTCAACCCGGCGGTGACGTTCGGGATGGCGGTCGGCGGCCATATCAGTGTTCCTACCGCTCTCTTCTATTGGTTTGCTCAAATGCTTGCCTCTATCATGGCTTGCATTGTTCTTAGAGTCACCATTGTTGGACAGCGCGTTCCAAGCTATGTCATTGCCGAGGAGATGACGGGCTTCGGAGCATCGGTGGTAGAAGGTGTATTGACGTTTGCTCTAGTGTACACTGTTTTTGTCGCTAGTGACCCGAGAAGAGGTCCATGCAATGCGATCGGCGCTGTGATGGTCGGGCTGATGGGCGGAGCCAACGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCAGCGTGTGCGTTCGGGTCGGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATCGGAGCAGCTCTCGCTGGGATTGTTCACAATAATGTGATTTTTCCGACTGAAAATAAAGTTTAA 735 55.1 MAPTSLAYRFRQSVAPTALRSYAAEFISTFFYVFSVVGASIASRKFVPGAAATDPSSLLVAAIANAFALASAIYIAANVSGGHVNPAVTFGMAVGGHISVPTALFYWFAQMLASIMACIVLRVTIVGQRVPSYVIAEEMTGFGASVVEGVLTFALVYTVFVASDPRRGPCNAIGAVMVGLMGGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHNNVIFPTENKV 244
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 9620866 9622498 + Carg20827-RA Car15g01239 163076
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car15g01239 244 Pfam Major intrinsic protein 16 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car15g01239 244 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01239 Car-Chr15:9620866 Car18g00101 Car-Chr18:544821 1.80E-54 dispersed
Car15g01239 Car-Chr15:9620866 Car03g01082 Car-Chr3:8799843 1.36E-61 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01239 K09873 - csv:101214078 412.535