Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g01239 | ATGGCCCCTACTTCCCTGGCTTATCGCTTCCGACAATCCGTTGCCCCGACCGCCCTCCGATCCTACGCTGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCCGTCGTTGGAGCATCAATCGCCTCCCGGAAGTTTGTGCCCGGGGCTGCTGCAACCGACCCATCGAGCCTTTTGGTGGCGGCTATTGCTAATGCCTTTGCTTTGGCCTCAGCCATTTACATTGCTGCCAACGTCTCCGGCGGACATGTCAACCCGGCGGTGACGTTCGGGATGGCGGTCGGCGGCCATATCAGTGTTCCTACCGCTCTCTTCTATTGGTTTGCTCAAATGCTTGCCTCTATCATGGCTTGCATTGTTCTTAGAGTCACCATTGTTGGACAGCGCGTTCCAAGCTATGTCATTGCCGAGGAGATGACGGGCTTCGGAGCATCGGTGGTAGAAGGTGTATTGACGTTTGCTCTAGTGTACACTGTTTTTGTCGCTAGTGACCCGAGAAGAGGTCCATGCAATGCGATCGGCGCTGTGATGGTCGGGCTGATGGGCGGAGCCAACGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCAGCGTGTGCGTTCGGGTCGGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATCGGAGCAGCTCTCGCTGGGATTGTTCACAATAATGTGATTTTTCCGACTGAAAATAAAGTTTAA | 735 | 55.1 | MAPTSLAYRFRQSVAPTALRSYAAEFISTFFYVFSVVGASIASRKFVPGAAATDPSSLLVAAIANAFALASAIYIAANVSGGHVNPAVTFGMAVGGHISVPTALFYWFAQMLASIMACIVLRVTIVGQRVPSYVIAEEMTGFGASVVEGVLTFALVYTVFVASDPRRGPCNAIGAVMVGLMGGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHNNVIFPTENKV | 244 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 9620866 | 9622498 | + | Carg20827-RA | Car15g01239 | 163076 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g01239 | 244 | Pfam | Major intrinsic protein | 16 | 233 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Car15g01239 | 244 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car15g01239 | Car-Chr15:9620866 | Car18g00101 | Car-Chr18:544821 | 1.80E-54 | dispersed | |
| Car15g01239 | Car-Chr15:9620866 | Car03g01082 | Car-Chr3:8799843 | 1.36E-61 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g01239 | K09873 | - | csv:101214078 | 412.535 |