Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car15g01258 | ATGGTTCGAGGAAAAGTTGAAATGAAACGGATTGAGAATTCGACAAGCCGTCAAGTGACATTCTCAAAGAGACGAAATGGGATATTGAAAAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGAAGGCTCTATGAGTTCTCCAGCTCCATTATGCAAAAGACAATCGAACGCTACCGCAAGTATGGGAAAGGTGGAGAAACCAACACTTTTCAATCCGAAGGATATATGCAGCAAATGGAGCAAGAAGCTGAAATGACGGCAAAAAAAATTGAGGAACTTGAAAAGTCACAAAAGAAGCTTTTGGGACGAGGCTTAGATTCTTGTTCCTTTGAGGAAGTTCGTGAGATCGAAAAACAGTTGATACTAAGCTTAACCCGCATTAGAGAAAGAAAGGCTTTGCTGTTTAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGGGAAACTCCTTATAGAAGAAAACAAAAAGTTATCTGCTAAGTGTGGTACTAAGCCATGGGAACAAGAAGGTATTGAAGCAGAGGGAGGCATAATGAGTTTATGCAGCCAAAGTAGACAGGGTTCTGATATACAGACTGAATTGTTCATTGGATTGTCTTGCTCATAA | 636 | 39.94 | MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQQMEQEAEMTAKKIEELEKSQKKLLGRGLDSCSFEEVREIEKQLILSLTRIRERKALLFKEQKEKLIEKGKLLIEENKKLSAKCGTKPWEQEGIEAEGGIMSLCSQSRQGSDIQTELFIGLSCS | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 9821035 | 9831359 | - | Carg20784-RA | Car15g01258 | 163095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car15g01258 | 211 | Pfam | K-box region | 87 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Car15g01258 | 211 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Car15g01258 | 211 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Car15g01258 | 211 | Coils | Coil | 87 | 107 | - | - | |
Car15g01258 | 211 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Car15g01258 | 211 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g00953 | Car-Chr6:7342139 | Car15g01258 | Car-Chr15:9821035 | 1.26E-56 | dispersed | |
Car14g01800 | Car-Chr14:14086186 | Car15g01258 | Car-Chr15:9821035 | 9.76E-55 | dispersed | |
Car15g01075 | Car-Chr15:8437266 | Car15g01258 | Car-Chr15:9821035 | 7.56E-61 | dispersed | |
Car15g01258 | Car-Chr15:9821035 | Car03g01215 | Car-Chr3:9481463 | 5.45E-42 | dispersed | |
Car02g00771 | Car-Chr2:5619098 | Car15g01258 | Car-Chr15:9821035 | 2.56E-45 | transposed | |
Car15g01258 | Car-Chr15:9821035 | Car02g00770 | Car-Chr2:5617406 | 5.30E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4882 | PF01486 | K-box | 1.30E-18 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car15g01258 | - | - | csv:101212323 | 326.25 |