Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01258 ATGGTTCGAGGAAAAGTTGAAATGAAACGGATTGAGAATTCGACAAGCCGTCAAGTGACATTCTCAAAGAGACGAAATGGGATATTGAAAAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGAAGGCTCTATGAGTTCTCCAGCTCCATTATGCAAAAGACAATCGAACGCTACCGCAAGTATGGGAAAGGTGGAGAAACCAACACTTTTCAATCCGAAGGATATATGCAGCAAATGGAGCAAGAAGCTGAAATGACGGCAAAAAAAATTGAGGAACTTGAAAAGTCACAAAAGAAGCTTTTGGGACGAGGCTTAGATTCTTGTTCCTTTGAGGAAGTTCGTGAGATCGAAAAACAGTTGATACTAAGCTTAACCCGCATTAGAGAAAGAAAGGCTTTGCTGTTTAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGGGAAACTCCTTATAGAAGAAAACAAAAAGTTATCTGCTAAGTGTGGTACTAAGCCATGGGAACAAGAAGGTATTGAAGCAGAGGGAGGCATAATGAGTTTATGCAGCCAAAGTAGACAGGGTTCTGATATACAGACTGAATTGTTCATTGGATTGTCTTGCTCATAA 636 39.94 MVRGKVEMKRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSIMQKTIERYRKYGKGGETNTFQSEGYMQQMEQEAEMTAKKIEELEKSQKKLLGRGLDSCSFEEVREIEKQLILSLTRIRERKALLFKEQKEKLIEKGKLLIEENKKLSAKCGTKPWEQEGIEAEGGIMSLCSQSRQGSDIQTELFIGLSCS 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9821035 9831359 - Carg20784-RA Car15g01258 163095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01258 211 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car15g01258 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car15g01258 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car15g01258 211 Coils Coil 87 107 - -
Car15g01258 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car15g01258 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00953 Car-Chr6:7342139 Car15g01258 Car-Chr15:9821035 1.26E-56 dispersed
Car14g01800 Car-Chr14:14086186 Car15g01258 Car-Chr15:9821035 9.76E-55 dispersed
Car15g01075 Car-Chr15:8437266 Car15g01258 Car-Chr15:9821035 7.56E-61 dispersed
Car15g01258 Car-Chr15:9821035 Car03g01215 Car-Chr3:9481463 5.45E-42 dispersed
Car02g00771 Car-Chr2:5619098 Car15g01258 Car-Chr15:9821035 2.56E-45 transposed
Car15g01258 Car-Chr15:9821035 Car02g00770 Car-Chr2:5617406 5.30E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4882 PF01486 K-box 1.30E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01258 - - csv:101212323 326.25