Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01262 ATGGCTAAGGAAGAAGTTAGCATAAGTGATGAAGCTGACCGTCGGTTACCTGCACACTCCAGCGCCGAATGCGACCCACTGGCTGCTTCGACATCGGCGTCTGTAGGACCGCTGTGGCATCCTAGGCAACTCGGTTTTAGTCCTTATTTGTACCGGGAAGATGCTGCTGCTGCTGCTGCTGCTGCGAAACCCCAAGATTCGCGTTTTGCCGCCAGAATACCCCTGGTTGCTAGATTAACCAAGGACATCGTTGAAACCTACAGAAAATGCAATCCAGAGTTTAAATATTCAGAAGAGTTAAACCTGAAGAGATTTTTGACGAGTCCATCAACTGGAGTCCTCAATGATGGCTATGATAATGTGAACTCAGATCTTATTTTGACGGTGAACTCCGTTTTACTCAATTCTGATACACAACGGAGATATGTTGTCAAAGATCTACTTGGTCATGGGACCTTTGGGCAGGTTGCTAAATGCTGGGTTGCAGAAACTAACAGCTTCGTAGCTTTGAAGATCATAAAAAACCAACCTGCATATTATCAGCAAGCACTGGTTGAAGTATCTATTTTGACATTGTTAAATAAGAAGTATGATCCTGAGGACAAGCATCATATTGTCCGTATTTATGATTACTTTGTATATCAACGTCATCTGTGCATTTGCTTCGAGCTGCTTGATACAAATTTGTATGAGCTTATCAAGATCAATCATTTTAGGGGGTTGTCATTGAGCATTGTTCAAATGTTATCCAAACAGATCTTATGCGGGCTTGCACTATTGAAAGATGCTGGCATTATTCATTGTGATTTAAAGCCAGAAAATATTCTATTATGCACGAGCAGTGCCAAGCCGGCAGAAATTAAAATAATTGACTTCGGATCAGCTTGCATGGAAGCCCGCACTGTTTATTCTTACATCCAGAGCCGCTACTATAGGTCTCCAGAAGTCCTGCTCGGATATCAATACACTACAGCTATAGATATGTGGTCCTTTGGATGCATAGTTGCTGAGTTGTTTCTTGGACTGCCATTATTTCCAGGAGCTTCTGAGTTCGATTTATTGAGGCGGATGATCGACATTCTTGGGGGACAGCCTCCGGATTATGTTCTGAAGGAGGCAAAACATACTAGCAAATTCTTTAAATTTATTGGAGGTTTCCATAATGAAATTGGTGATATTTATGGAAGTGGTCGAAGCAGTTTTCAAGCATTAAAAGCAGATGAATATGAAGCTAGAGAGATGAAAAAGCCTTCAATTGGAAAAGAGTATTTCAATCGAATGAACCTCGAGGCAATTGTGACTAACTACCCTTACAGAAAGAACTTAGCTGAGGAAGATATTAGGAAAGAGAGTCAAGTACGATTGGCCTTAATTGATTTCCTAAAGGGCCTTGTAGAGTTCGATCCTGCAAAAAGGTGGTCGCCTTTCCAGGCCTCCAAACACCCTTTTGTCACAGGAGAGCCTTTCACATGCCCATACACGCCTCCACCGGAGACCCCACGTTTGCTTGTTTCACAAAGCATAAAGGTGGACAACCATCATCCAGGTGGAGGGCATTGGTTTGCAGCTGGTCTCTCTCCCAATGTGAGACTGCTGTCCCTTTACTACCGTGGTGGTCTTTCAAATTGTTTGTTGTCATTTTTGCCAGATTTACCAAGTAGGAGCAGAGTTCTGCAGAGCAGCCCACATTTTCAAATGGTACCATATGTCCATGCCAACAGTTATGGCAGCGTTGGAAGTCATGGTAGCTACAACGAAACTATTGGGTTCGGAAACAGCTACGGAAGTTACGGAGACAATGGTATGCTTGCCTATTATTCACCTGTTGGTCCATCTGGAATGAATATGCATCCTCAGGGAAGGATATCAATGCGTGCAAGCAGCCCAGATACTCGGCAGAGGGTTTTCCAATTATCACATGGCAATGGGATTGGTGTGAGCCCATCAACCGGGAACTTTGCGCCACTGCCCCTAGGCACGAGTCCATCGCAGTTTACTCCACCGAGCAGCTATGGTCAAGTTTCAGTGGGCTCTCCTGGACACTTTGGGCCAACTTCTCCTGCAAGGGGTAGTTGTCAGGGATCGCCTTTGGGGAAAATGGCTACAGTCGGTCAATTTAATAGAAGGAAATTTTGGGATTACTCTGGTAGTCATGATGGTTCTTCATCTTCGCACTGGCAAGGTCAATCTACTGAAGGCACGAGTTACGGTCTACAAGCTGATGGGAACTCTTTACATGGTTGCTCCCCATCTCATCTACCACCAAGTAGCAATGCCAGCAGCTGGAAGCAGCAGCATCAAGTAGGTAGTGGAAGCTCTGCTGGTTACCCTACCATTCAGAGTATGCCAGGAGCTCATTTGCCTGGTTCCAATATGCAATTTTCGCAACCATCGGACGTGGCTCGTAACAAGTCTGAATTGCCTAATCCTGGAGATTGGGATCCCAATTATAGTGATGAACTACTCCTCCAAGATGATGGGGATTCAGATGTCAGCAGCATTGCGAGTGAGTTGAGCAACATGCATGTGGGTTCATCTAATCCATCGATTGGGATTGGAAGATTTCGTATGCCAAGCGCTAATTTGAATGTAACCTCACAAAGAAAAAGTGGACATGTCCAAGATATGGGAAGCCCGCCCTCAGGTCAAGATTTGTACACCGGATATGGTCGTCCCTCATCGAAGCATTCCCATTTCATGGCTCATAGTTCACACAATTCCCCGAGCCGTTTGGGGCAGCAACCTGTTGAGCGATGGAAGGAAGGGAGAAGCAGGAAGGTCGGAGGAGGTTACGAGTGGAGCCAGGTGAAGATCCAACCGCCTCTTGCGAGCTATAATTCTGGAGGCCCTGGTTCTCCCGGAGGAGGAGGAAGTGGTGGTGGTGGTGGTGGGTCCTTGAGGAGTAGGAGTGGTGGGATGTCATGGGGTAAATATGATGGTGATGATGCTTTGAAAACCACAGTATATGGTGTGAATGTGAATGAATGA 2988 45.55 MAKEEVSISDEADRRLPAHSSAECDPLAASTSASVGPLWHPRQLGFSPYLYREDAAAAAAAAKPQDSRFAARIPLVARLTKDIVETYRKCNPEFKYSEELNLKRFLTSPSTGVLNDGYDNVNSDLILTVNSVLLNSDTQRRYVVKDLLGHGTFGQVAKCWVAETNSFVALKIIKNQPAYYQQALVEVSILTLLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINHFRGLSLSIVQMLSKQILCGLALLKDAGIIHCDLKPENILLCTSSAKPAEIKIIDFGSACMEARTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIDILGGQPPDYVLKEAKHTSKFFKFIGGFHNEIGDIYGSGRSSFQALKADEYEAREMKKPSIGKEYFNRMNLEAIVTNYPYRKNLAEEDIRKESQVRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYTPPPETPRLLVSQSIKVDNHHPGGGHWFAAGLSPNVRLLSLYYRGGLSNCLLSFLPDLPSRSRVLQSSPHFQMVPYVHANSYGSVGSHGSYNETIGFGNSYGSYGDNGMLAYYSPVGPSGMNMHPQGRISMRASSPDTRQRVFQLSHGNGIGVSPSTGNFAPLPLGTSPSQFTPPSSYGQVSVGSPGHFGPTSPARGSCQGSPLGKMATVGQFNRRKFWDYSGSHDGSSSSHWQGQSTEGTSYGLQADGNSLHGCSPSHLPPSSNASSWKQQHQVGSGSSAGYPTIQSMPGAHLPGSNMQFSQPSDVARNKSELPNPGDWDPNYSDELLLQDDGDSDVSSIASELSNMHVGSSNPSIGIGRFRMPSANLNVTSQRKSGHVQDMGSPPSGQDLYTGYGRPSSKHSHFMAHSSHNSPSRLGQQPVERWKEGRSRKVGGGYEWSQVKIQPPLASYNSGGPGSPGGGGSGGGGGGSLRSRSGGMSWGKYDGDDALKTTVYGVNVNE 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9852653 9866704 + Carg20780-RA Car15g01262 163099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01262 995 MobiDBLite consensus disorder prediction 660 699 - -
Car15g01262 995 MobiDBLite consensus disorder prediction 866 982 - -
Car15g01262 995 ProSiteProfiles Protein kinase domain profile. 142 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g01262 995 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Car15g01262 995 MobiDBLite consensus disorder prediction 1 20 - -
Car15g01262 995 MobiDBLite consensus disorder prediction 866 881 - -
Car15g01262 995 MobiDBLite consensus disorder prediction 897 913 - -
Car15g01262 995 MobiDBLite consensus disorder prediction 1 23 - -
Car15g01262 995 MobiDBLite consensus disorder prediction 716 803 - -
Car15g01262 995 Pfam Protein kinase domain 142 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g01262 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Car15g01262 995 MobiDBLite consensus disorder prediction 660 680 - -
Car15g01262 995 MobiDBLite consensus disorder prediction 716 820 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01262 K18670 YAK1; dual specificity protein kinase YAK1 [EC:2.7.12.1] - csv:101210441 1660.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g01262 Car18g00952 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00615 Car-Chr13:7869463 Car15g01262 Car-Chr15:9852653 2.98E-47 dispersed
Car13g00978 Car-Chr13:9743954 Car15g01262 Car-Chr15:9852653 5.02E-53 dispersed
Car15g01262 Car-Chr15:9852653 Car08g00803 Car-Chr8:5404489 4.87E-31 dispersed
Car18g00195 Car-Chr18:1109202 Car15g01262 Car-Chr15:9852653 1.31E-19 dispersed
Car15g01262 Car-Chr15:9852653 Car18g00952 Car-Chr18:10140177 2.13E-26 wgd
Car15g01262 Car-Chr15:9852653 Car02g00777 Car-Chr2:5660626 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006755 0 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89415 PF00069 Pkinase 1.50E-49 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01262 Car_Chr15 FPKM 1.250409 0.561681 27.373526 31.091492 0.0 0.123433 0.0 0.067948 0.0 0.066332