Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01273 ATGGCATCTTCTCGAGTGGCTGGAGGATTAGCGCAGTCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGGTACTATTAAATCTCACTTGGGCTCATCTTATGGAAATTCATCAAATTCAATTCCAGGAGCTGGCCATTCAAATTTTGGTCCTGTTTCTGGGGACACAAATAATGGAGCGTTGAATAGTGTGGCTAACTCAGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCCAACTCTGCACTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTTCATCAAATAACATGGGTATCTCAGGTGCATCACTCATTGATGCATCTTCTGTAGTGCAGCACAATCCTCAGCAGGATCATAATGCCACTCAATTGCCACAGACCCAGCCACAGGCCCGACAAGTTTCTCCAGGGGATGCATCACTGTCTAATTCACAAACAGCCCAAGCTTCACTCCCCATGGCTGCACGTGTCTCTGGATCGCTGATGACAGATCCCAACAGTTATTCTCAGTTACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTCCTGCAACAGCAGATGCTACAACAGCTACTTCAAAGACAAGATTCCATGCAACTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGGCAGCAGCAACAAATGTTTCAGTCTTTGCCTCCTTTGCAGAGAGCTCATCTGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAACAGCAAGCAATACAACCTGTGAATGCTATGAAGCGGCCTCATGATGGTGGTGTATGTGCTCGGCGGCTAATGCAGTACCTATACCATCAACGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACAGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGTCATCATGCACTTGGTGTTTTCCCTCAAGCAGCCATGGATGCATGGCAGTGTGACATTTGTGGTTCTAAATCTGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGACTAAATGAGATCAAATTTGGCAGTGGAGTAATTGATGAGTTATTGTTCTTGGATATGCCTCGGGAAATCAGATATTCATCTGGAATTATGATGTTAGAATATGGAAAAGCCGTTCAAGAGAGTGTATATGAGCAACTTCGTGTAGTTCGTGAGGGCCAGCTTCGTATCATATTTACACATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGGCTGGTTGCACCTCAGGTGAATCAGCTGGTTCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCCGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACTGCTGGGCAGCAGCTTGCAAAGAGCCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTTAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAAGGAGCAGAAAACAGGACCAGTTGAGGGTTTGAAAAGTTATCCTCAGCACGCTACAGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGGGTCTGCCAACCGACCGTAACACCCTTAGTAGAATGGTTGCCCTGCATCCTGGACTGGACAACCAAATGAATAGCCAAAATCAACTAATCGGTAGAGGAGCTTTGAGTGGTTCGGCACAAGCTGCGTTGGCATTGTCTAGCTACCAGAATCTGCTAATGAGACAGAGCTCAATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACAGCGTCATTCAATAACTCTAACCACCAGAGTCCTTCATCAAGCTTTCATGGGACAACAGCATTATCATCGGCACCAATGCAGAGCTTGCCTGGCAGTGGTCTTTCAAGTCCTAATCTACCACCTCCGCAACAATCTCAGCAATCTCAAGTTCAACAGCAACTGCATCAACGCCCGAACGCCAACAATTTACTTGTGCAAAACCATCCTCAGACTACCCAAGGGAACAGTAACAATAATCAGGCCATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGAGGAGGGCAACAGCGACCACTTCCTGGATCAAACATGAAAGGAGGAGGAAGCATGACCGGAACTTATACGGGTTTTGGAGGCAGCTCTTCTGTGGTTGCAGCAGGCTCAGCCAATGCATCCGGTAGTAATACGCCTGCCCCAACCCGTAGTAGTAGTTTCAAAAATGCTTCAGCTGGTGATGTATCAGCAGCAGCCGGTTCTCGTAGCAGCAGTGAGTTCAACCAAAGAACTGCAGATTTGCCGCAAAGTCTTCATCTGGATGAGGATATAATCCAGGATATAGCCCATGATTTTACAGAAAATGGGTTTTTTAACAGTGATCTTGACGATAATATGTGCTTCGCCTGGAAAGGTTAA 2610 45.48 MASSRVAGGLAQSSSSSGIFFQGDGQSKGTIKSHLGSSYGNSSNSIPGAGHSNFGPVSGDTNNGALNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFSSNNMGISGASLIDASSVVQHNPQQDHNATQLPQTQPQARQVSPGDASLSNSQTAQASLPMAARVSGSLMTDPNSYSQLQKKPRLDIKQDDFLQQQMLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQMFQSLPPLQRAHLQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREIRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCKEQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVATAQGLPTDRNTLSRMVALHPGLDNQMNSQNQLIGRGALSGSAQAALALSSYQNLLMRQSSMNSTSSNPLQQETASFNNSNHQSPSSSFHGTTALSSAPMQSLPGSGLSSPNLPPPQQSQQSQVQQQLHQRPNANNLLVQNHPQTTQGNSNNNQAMQHQMIQQLLQISNNSGGGQQRPLPGSNMKGGGSMTGTYTGFGGSSSVVAAGSANASGSNTPAPTRSSSFKNASAGDVSAAAGSRSSSEFNQRTADLPQSLHLDEDIIQDIAHDFTENGFFNSDLDDNMCFAWKG 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9945714 9951649 + Carg20769-RA Car15g01273 163110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01273 869 Pfam LIM-domain binding protein 298 558 IPR029005 -
Car15g01273 869 MobiDBLite consensus disorder prediction 748 772 - -
Car15g01273 869 MobiDBLite consensus disorder prediction 786 827 - -
Car15g01273 869 MobiDBLite consensus disorder prediction 1 60 - -
Car15g01273 869 MobiDBLite consensus disorder prediction 135 175 - -
Car15g01273 869 MobiDBLite consensus disorder prediction 639 708 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car15g01273 Car16g00126 CCT
Car15g01273 Car18g01131 CCT
Car15g01273 Car16g00126 ECH
Car15g01273 Car18g01131 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00900 Car-Chr1:8492680 Car15g01273 Car-Chr15:9945714 2.80E-115 dispersed
Car04g02333 Car-Chr4:18779618 Car15g01273 Car-Chr15:9945714 1.00E-115 dispersed
Car09g00969 Car-Chr9:6082539 Car15g01273 Car-Chr15:9945714 3.17E-113 dispersed
Car15g00580 Car-Chr15:3208516 Car15g01273 Car-Chr15:9945714 1.52E-114 dispersed
Car15g01273 Car-Chr15:9945714 Car16g00126 Car-Chr16:731820 0 dispersed
Car15g01273 Car-Chr15:9945714 Car02g00788 Car-Chr2:5733095 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01273 - - bhj:120092747 1308.89