Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01288 ATGCTTCTTCCAAGTGAAGTCCCTGAAGACAACAACGATAATCTTCCGAACATGGTCTCGAGCGGTTGCGATGAGGAGCGAGCTAAAATGGTGGATGAAAGAAGGCAAAGGAGGATGATATCGAATCGAGAATCGGCTCGAAGGTCCCGAATGAGGAAGCAGAAGCATCTGAACCAGCTATGGTCCCAACTGGCTCGGCTTTGCAATGAGAACCGTGATCTTGAGGAGAAGGTGAGCCGTTTGATGGAGTCTCAGCAGCTCCTTCTCCAAGAGAATGTCAACCTTAAGCAACAAGTTTCGGGTTTTCGCCAAATCTTAAGGGACATGGAACTTGAACAACAACTCGTCGCCCAATTTTGA 360 48.06 MLLPSEVPEDNNDNLPNMVSSGCDEERAKMVDERRQRRMISNRESARRSRMRKQKHLNQLWSQLARLCNENRDLEEKVSRLMESQQLLLQENVNLKQQVSGFRQILRDMELEQQLVAQF 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10056241 10056600 + Carg20753-RA Car15g01288 163125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01288 119 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 37 52 IPR004827 GO:0003700|GO:0006355
Car15g01288 119 Pfam bZIP transcription factor 34 92 IPR004827 GO:0003700|GO:0006355
Car15g01288 119 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 32 95 IPR004827 GO:0003700|GO:0006355
Car15g01288 119 Coils Coil 57 91 - -
Car15g01288 119 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01288 - - - bhj:120076881 141.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01288 Car-Chr15:10056241 Car18g00997 Car-Chr18:10420111 4.04E-26 wgd
Car15g01288 Car-Chr15:10056241 Car04g01617 Car-Chr4:9338660 1.28E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g179 Blo01g00433 . Bda01g02145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02334 . . . . . . . . Car15g01288 . . . . . . . . . . . . . . . . . . Chy09g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014904 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 1 0 0 0 0 17
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4884 PF00170 bZIP_1 5.50E-12 CL0018 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01288 Car_Chr15 FPKM 4.991493 5.877477 10.900215 11.290232 36.542816 36.761753 36.388908 14.807779 14.569766 15.352869