Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00016 ATGGAAAACGCCGCCCCAAGATCCGAATTCATGGCCACCTACGATTCCCCGCACCCTCTCTATGCCATGGCCATCTCTTCCGCCCACACCCACTCTCGCACTTTCCCCAATCGCATAGCCCTTGGTAGCTTCATCGAACAGTGCACCAACCGTGTCGACATTGTGTCTTTTGATCCAGATTCCCTCTCCATTCAAACGCATCCTTCTCTCTCCTTCGACCACCCCTACCCACCCACCAAGCTCATGTTCAATCCCAATGCCCTCTCCTCTCTCCGCAACTCCTCCGACATCTTGGCCTCCTCCGGCGACTATCTCCGCCTCTGGCAAGTTGGAGATTCTTCTATCGAACCCCTCTCTGTCCTCAACAACAGCAAAACCAGTGAATTCTGCGCCCCCTTAACTTCCTTCGACTGGAATGAAGTCGAGCCCAAGAGAATTGGAACCTCCAGCATTGATACCACTTGTACTATTTGGGATATTGAGAAGAGCGTGGTTGAAACCCAGTTCATAGCTCACGACAAAGAGGTTTATGACATTGCGTGGGGGGAAGCCCGGGTTTTTGCCTCCGTTTCCGCTGATGGGTCGGTCAGGATTTTCGACTTGAGAGATAAAGAGCACTCCACCATTATATACGAAAGCCCCCAACCCGATACCCCTTTGCTTAGACTGGCTTGGAACAAGCAGGACCTGCGGTACATGGCCACAATTTTGATGGACAGCAACAAAGTTGTTATTTTGGACATTCGCTCGCCAAGTGTGCCGGTTGCTGAGCTGGAGAGGCATCATTCCAGTGTCAATGCCATTGCCTGGGCTCCACGGAGCTGCAGACATATTTGCTCCGCTGGGGATGACAAACAGGCGCTTATTTGGGAGTTGCCAATGGTTGCAGGCCCGAATGGCATTGATCCAATGTCCATGTATTCTGCTGCACATGAAATTAACCAGTTGCAGTGGTCCGCCGCCCAGCCTGATTGGATTGCTCTGGCGTTTTCTAACAAGATGCAGCTTTTGAAAGTTTGA 1020 51.57 MENAAPRSEFMATYDSPHPLYAMAISSAHTHSRTFPNRIALGSFIEQCTNRVDIVSFDPDSLSIQTHPSLSFDHPYPPTKLMFNPNALSSLRNSSDILASSGDYLRLWQVGDSSIEPLSVLNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIEKSVVETQFIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSMYSAAHEINQLQWSAAQPDWIALAFSNKMQLLKV 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 200732 201751 + Carg15035-RA Car16g00016 163168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00016 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 209 IPR001680 GO:0005515
Car16g00016 339 Pfam WD domain, G-beta repeat 255 290 IPR001680 GO:0005515
Car16g00016 339 Pfam WD domain, G-beta repeat 169 200 IPR001680 GO:0005515
Car16g00016 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 292 IPR001680 GO:0005515
Car16g00016 339 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00016 K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7 - csv:101218986 620.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01246 Car-Chr11:10399201 Car16g00016 Car-Chr16:200732 4.28E-149 dispersed
Car16g00016 Car-Chr16:200732 Car11g00571 Car-Chr11:3079777 3.63E-10 dispersed
Car16g00016 Car-Chr16:200732 Car14g00715 Car-Chr14:3977746 9.59E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g958 . . Bda05g00144 . . . Bma10g01322 . Cmo16g00019 . . . . . . . Cpe14g00015 . . . . . . . . . . . . . . Cone1ag1023 Cone5ag0730 . . . . . . Blo07g00313 . . . . . . . . . . Cma16g00016 . Car16g00016 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001974 2 3 2 4 2 2 3 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 2 2 1 2 2 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00016 Car_Chr16 FPKM 12.343277 11.069959 30.863379 33.523453 106.15519 94.960602 110.346306 28.670696 29.959705 27.560713