Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00018 ATGGGTTCGTTTGCACACGGAAAGAGCAGCAGCACTACTATCTTCTTGGTTTGTATTTCCGTTTTCACAGCTCTCGATCATCTGTGTACATTACACATTCGTGTGGCTGCCAAAAGCAACGTGTACATCGTTTATATGGGCCAAAAACCACATGATAATGAAGAACTGCTGGTAAAGGCCCATCATGGAGTTCTTGCCTCTGTCCTTGGGAGCCAAGAAGGATCTGTAGATTCCCTGGTATATAGCTACAAATATGGATTTTCTGGTTTTGCAGCAAAGCTTACCATGGCTCAAGCACAAATGATCTCAGAGTTGCCTTCAGTGGTTGAAGTCATACCCAATCGTCTTCACAAGATGCAAACAACTAGGAGCTGGGACTACCTTCAACTGTCTCCACGATTTCCAAACTCTCTTCTACGGAAATCAAGAATGGGGAGTGGGGCCATCATTGGTGTCCTTGATACAGGAATCTGGCCCGAGTCTGAAGTTTTCTGTGATGAGGGTCTGGGGCCTGTGCCCTCTAGGTGGAAGGGTATATGCGAGTCAGGAGAGCTCTTCAGTCCAGCCAAGGCTTGTAGCAGAAAGCTAATTGGAGCCCGATATTTCGTCAAGGGGCTGGAAGCTGCATATGGACATCCCTTAAATAATAGTGAGTTCCAAGATTACTGGTCTCCAAGAGATAGATCAGGACATGGCACACATGTCTCTTCCGTCGCTAGTGGCTTCTTTGTGCCCAATGTTAGTTACCATGGGCTAGCTGTTGGAACGGTAAGGGGTGGCGCGCCCCACTCTCGGATTGCTATGTATAAAGTCTGTTGGCAAGTGAATGGAGGAGTATGCGCAGACATAGACATTCTCAAGGCCATCGATCAAGCGATATATGATGGTGTAGATGTACTATCTCTGTCCCTCGGTCCTTCCTTTCCTTCATACTCTGATGTTGACATGCGCAATGGGATTGCAATTGGCGCATTTCATGCTGTGGCGAAGGGAATAGTTGTTGTTGGTGCAGCAGGAAATTCTGGTCCAGCAGCATACTCTGTCTCTAATATAGAACCATGGTTATTGACAGTCGCTGCAAGTTCTGTCGATCGTTCATTCTTAGTAGCGATTACATTAGGAAACAACTGGACTACCATGGGACAAGGGATGTTCAGCGGAAAATTGACGAAGTTCCACAATTTAGTGTATCCTGAGGTCTCTGATCTGGATGACGAACGCGCTTGCGAATCTCTATCGTTGAATGATACATGGGCAGCTGGAAATGTGGTTCTGTGTTTTGCATCAGATGATTATAATGACGACACACACAATACTTCCTCGTCCGTCAAAAAAGTTGGTGGGCTGGGGCTCATTGTTGCCAAGAATCCTACCAAGGCGGTCGAACCGTTCATAAACAACTTCCCATGCGTTCAAATAAGCCTTGATATTGGAATGCAGATACTCAACTATATCCGCTCCACCAGAAATCCCCAAGTCAAGATTGGTGCTTCAACGACACGTGTTGGTCAGCCATTGTCCACCACTGTGGCCTACTTCTCATCTCGAGGACCTAATTCAGTTGCTCCAGCAATACTGAAGCCAGATATTGCGGCTCCAGGCGTTGCTATTTTAGCTGCTGTTCCTCCGTCTGACCCAAAGGACAGAAATTCTTATGCTTTCATTTCTGGTACATCCATGGCAACTCCTCATGTATCAGCCATTGTTGCCCTTCTCAAAACATTGCACTCTCATTGGTCCCCTGCCGCAATCAAGTCAGCCATTGTTACAACAGCCTGGAGTTCGGATCCATATGGCGCAGTAATATTCGCGGAGGGACAACCAATGATGTCTGCCCGTCCTTTCGATTTTGGAGGTGGAATAGTGAACCCCAATAAAGCAGTGGACCCTGGTCTTGTATACGACATGGGAATGGCAGATTATATTCAGTATTTCTGTGCGAAGGGCTATAACGACTCCGCCATCTCGGGGATTACCAAGAGGTCCATATCTTGCCCCAAAAGACGACCATCTATTTTGGATATAAACGTGCCATCCATAACAATTCCCAGCCTTACTCACCCGGTAAGTCTCACCAGAACTGTCACAAATGTGGGTGCGATCAATTCCTCATACAAGGCTGCCATTGAGGCCCCGCCCGGCATCACCATAGCCATAAAGCCTCGTATACTAAAATTCAACCACAAGATGAAGAGCATCTCCTTCACCGTTACTATCTCTTCTAATCACAGAGTAACAACCGGATACTGTTTTGGAAGCTTGACTTGGCTGGATGGAGTTCATTCCGTTAGGATCCCAGTTTCTGTAAGAACTAACATTTGA 2322 46.6 MGSFAHGKSSSTTIFLVCISVFTALDHLCTLHIRVAAKSNVYIVYMGQKPHDNEELLVKAHHGVLASVLGSQEGSVDSLVYSYKYGFSGFAAKLTMAQAQMISELPSVVEVIPNRLHKMQTTRSWDYLQLSPRFPNSLLRKSRMGSGAIIGVLDTGIWPESEVFCDEGLGPVPSRWKGICESGELFSPAKACSRKLIGARYFVKGLEAAYGHPLNNSEFQDYWSPRDRSGHGTHVSSVASGFFVPNVSYHGLAVGTVRGGAPHSRIAMYKVCWQVNGGVCADIDILKAIDQAIYDGVDVLSLSLGPSFPSYSDVDMRNGIAIGAFHAVAKGIVVVGAAGNSGPAAYSVSNIEPWLLTVAASSVDRSFLVAITLGNNWTTMGQGMFSGKLTKFHNLVYPEVSDLDDERACESLSLNDTWAAGNVVLCFASDDYNDDTHNTSSSVKKVGGLGLIVAKNPTKAVEPFINNFPCVQISLDIGMQILNYIRSTRNPQVKIGASTTRVGQPLSTTVAYFSSRGPNSVAPAILKPDIAAPGVAILAAVPPSDPKDRNSYAFISGTSMATPHVSAIVALLKTLHSHWSPAAIKSAIVTTAWSSDPYGAVIFAEGQPMMSARPFDFGGGIVNPNKAVDPGLVYDMGMADYIQYFCAKGYNDSAISGITKRSISCPKRRPSILDINVPSITIPSLTHPVSLTRTVTNVGAINSSYKAAIEAPPGITIAIKPRILKFNHKMKSISFTVTISSNHRVTTGYCFGSLTWLDGVHSVRIPVSVRTNI 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 203184 212568 - Carg15037-RA Car16g00018 163170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00018 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 557 567 IPR023828 -
Car16g00018 773 Pfam Subtilase family 145 592 IPR000209 GO:0006508|GO:0008236
Car16g00018 773 ProSitePatterns Serine proteases, subtilase family, histidine active site. 231 241 IPR022398 -
Car16g00018 773 ProSiteProfiles Serine proteases, subtilase domain profile. 124 628 - -
Car16g00018 773 Pfam Peptidase inhibitor I9 41 115 IPR010259 -
Car16g00018 773 Pfam Fibronectin type-III domain 674 769 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00624 Car-Chr2:4706959 Car16g00018 Car-Chr16:203184 1.10E-172 dispersed
Car15g00037 Car-Chr15:319845 Car16g00018 Car-Chr16:203184 6.52E-13 dispersed
Car16g00018 Car-Chr16:203184 Car05g00411 Car-Chr5:2337419 8.63E-158 dispersed
Car18g00527 Car-Chr18:4143100 Car16g00018 Car-Chr16:203184 3.68E-61 dispersed
Car16g00018 Car-Chr16:203184 Car07g00646 Car-Chr7:3282729 2.20E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00018 - - qsu:112022505 989.564