Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00022 ATGGTGGGAGGTGCGGGACTTGAGATGGAGGTGGAAGATGAAGGAGAGGGAGAGGAGAGAGAGGAGGAGGATAATGGCGATGAAGGAGATGGTGGTGAGATCGAAGGTCGCAGGATCCAAGAAAGAGAGAGGAGCAATGAAGAACATCGATTTTTGTCCGTCGCCCCTGGGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTCTATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAGAAGTTAACTCCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATTTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAGTGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACATAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCATGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGA 984 45.12 MVGGAGLEMEVEDEGEGEEREEEDNGDEGDGGEIEGRRIQERERSNEEHRFLSVAPGKLVSHFSYLPYPPIYSVLFSCVVFRRMNGQKLTPRRRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 227226 229941 + Carg15041-RA Car16g00022 163174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00022 327 MobiDBLite consensus disorder prediction 243 275 - -
Car16g00022 327 Pfam Homeobox associated leucine zipper 164 205 IPR003106 GO:0006355|GO:0043565
Car16g00022 327 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Car16g00022 327 MobiDBLite consensus disorder prediction 89 109 - -
Car16g00022 327 MobiDBLite consensus disorder prediction 1 47 - -
Car16g00022 327 MobiDBLite consensus disorder prediction 89 107 - -
Car16g00022 327 Pfam Homeodomain 109 162 IPR001356 GO:0003677
Car16g00022 327 MobiDBLite consensus disorder prediction 31 47 - -
Car16g00022 327 MobiDBLite consensus disorder prediction 9 30 - -
Car16g00022 327 MobiDBLite consensus disorder prediction 254 269 - -
Car16g00022 327 Coils Coil 163 204 - -
Car16g00022 327 ProSiteProfiles 'Homeobox' domain profile. 103 164 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00022 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101209671 228.024
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00022 Car18g01252 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00022 Car-Chr16:227226 Car07g00496 Car-Chr7:2483443 6.62E-27 dispersed
Car14g01931 Car-Chr14:14771487 Car16g00022 Car-Chr16:227226 1.20E-12 wgd
Car16g00022 Car-Chr16:227226 Car18g01252 Car-Chr18:11900083 1.54E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4887 PF00046 Homeodomain 5.30E-17 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00022 Car_Chr16 FPKM 19.706469 7.761423 17.867683 17.507601 8.099655 9.764275 11.196218 13.148928 15.137871 19.962021