Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00030 ATGATCGATCTGAAGATGGAAAGATTGCCAGCGGAAATCTGCTTGAAGATATTCTGTTTGTTGGATTCCCAGAGCCTCGCAACCGCACTTCAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCAAATTTATTCAAAGAGAGGTGGGGGGAAGACCATGCTGCATTTTATCACCCAGTTGGTTCGAAGTCATGGAAGGATTCATATGAAGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATAATCCGAGAAGGGAGCGACTACTACCTCATTCACCAAGGTGAAATCCAGAGGCACCTGGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTGCTATCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGATAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCAACAGACGCAAAGCGTAGCAGGGCTCTGTGA 507 44.38 MIDLKMERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPVGSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKRELLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 252562 254956 - Carg15049-RA Car16g00030 163182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00030 168 ProSiteProfiles F-box domain profile. 3 49 IPR001810 GO:0005515
Car16g00030 168 Pfam F-box-like 7 50 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00030 - - - mcha:111011451 326.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g999 . . . Bda07g01947 Bpe03g00202 . . . Cmo16g00037 . . . . . Sed07g0875 . . Bhi01g01518 Tan01g0062 Cmetu06g0118 . Hepe07g0040 Mch10g0038 . . . . . . . . . . . . . . . Cme06g01168 . . . . . . . . . . . Cma16g00032 . Car16g00030 . . . . . . . . . . . . . . . . . . Csa03g01966 Chy06g01177 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014793 1 1 0 0 1 0 1 1 1 0 0 0 1 1 1 1 0 0 0 0 1 1 1 1 0 0 1 1 1 1 18
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00030 Car_Chr16 FPKM 5.493721 6.445212 6.248794 9.763226 6.558288 5.800799 4.831923 10.900427 10.089292 11.066584