Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00032 ATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGAAAATTTCATCTTATGGTGGACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGTGTGCTTGCAGCTTTAATTATCATTTTCTTTACCGTTGTTTTCTGGCTGTTGAACATTTGCACTTTTGTTTTTGTCTCTCGACAGATGGTTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATGTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCGCAGGATTTGCGCGTACTGTGAAGTTATGA 870 47.47 MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFGGGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVLRFQVVWLEECEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAGFARTVKL 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 257733 261947 - Carg15051-RA Car16g00032 163184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00032 289 MobiDBLite consensus disorder prediction 1 48 - -
Car16g00032 289 MobiDBLite consensus disorder prediction 1 20 - -
Car16g00032 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 200 IPR000504 GO:0003723
Car16g00032 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 200 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00032 - - - cmos:111430853 445.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02349 Car-Chr4:18872895 Car16g00032 Car-Chr16:257733 9.10E-43 dispersed
Car16g00032 Car-Chr16:257733 Car01g00645 Car-Chr1:3802142 9.23E-06 dispersed
Car16g00032 Car-Chr16:257733 Car15g00561 Car-Chr15:3114687 6.79E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1004 . . . Bda07g01945 Bpe03g00200 . . . Cmo16g00039 . . . . . . . Cpe14g00026 Bhi01g01516 Tan01g0067 . . Hepe07g0042 Mch10g0042 . . . . . . . . Cone1ag1002 Cone5ag0710 . . . . . Cme06g01167 . Blo09g00014 . . . . . . . . . Cma16g00033 . Car16g00032 . . . . . . . . . . Cla05g00986 Cam05g1077 Cec05g1085 Cco05g1079 Clacu05g1071 . . . Csa03g01967 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010365 1 3 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00032 Car_Chr16 FPKM 19.510162 20.287609 14.169945 14.535915 8.215683 7.67066 10.8103 16.390543 15.829937 18.6702