Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00044 ATGGATTTGGATAGTATTGAGTGTGTATCATCTTCAGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCATCGACGAAACCTCGTAATGGAAGCAACAATAGTGCTATCACAGGCCCCACTGCGACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGCACCAATTCTATGTACCCACCCATCCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCGGAGTCACTCGAATTGCCTTGCAAGTATTATTCCTTGGGATGCCCCGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGCTTTGTGCAACTTCAGACCATACAATTGCCCATATGCCGGGTCGGAATGCTCTGCTGTTGGAGATATTCCTTTCCTTGTTGCTCATCTGAGGGATGACCACAAGGTGGACATGCACAGTGGATGCACATTCAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTGTTCAATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCTCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCTCGAACCTACAGCTACAGTCTTGAGGTTGGTGGATACGGTCGAAAACTAATATGGGAAGGCACGCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTATTCTTCTCTGGTGGGGATAGGAAGGAACTGAAGCTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGGGTCTGCATACCGAACCTGTGTAGCTGA 996 46.08 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSSTKPRNGSNNSAITGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFNCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 313640 316636 + Carg15063-RA Car16g00044 163196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00044 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Car16g00044 331 CDD RING-HC_SIAHs 68 106 - -
Car16g00044 331 CDD Sina 184 312 - -
Car16g00044 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 122 IPR013083 -
Car16g00044 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Car16g00044 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car16g00044 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Car16g00044 331 MobiDBLite consensus disorder prediction 41 58 - -
Car16g00044 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 311 IPR008974 GO:0005515
Car16g00044 331 SUPERFAMILY TRAF domain-like 123 315 - -
Car16g00044 331 SUPERFAMILY RING/U-box 58 110 - -
Car16g00044 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Car16g00044 331 MobiDBLite consensus disorder prediction 28 58 - -
Car16g00044 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 177 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car16g00044 Car18g01246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00770 Car-Chr15:4362429 Car16g00044 Car-Chr16:313640 7.36E-170 dispersed
Car16g00044 Car-Chr16:313640 Car17g00506 Car-Chr17:4494282 2.06E-180 dispersed
Car16g00044 Car-Chr16:313640 Car18g01246 Car-Chr18:11869814 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00044 K04506 - csv:101215696 668.692