Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00047 ATGGGATACGGCAGGCTCAACGAAACCGACCCTGGCGGCACTTCCTCTGACGCACCTTCCCACCTCTCCCACCATGCCGCTTCTCCCAACCCACGGAGAAGGCGGCTTCTCCTTATCTCCCTCCTTTCTCTCATTCTCATCGTCGCTGCCGCTGTCTCTGCCACGTTTCTCGTCGGCCTCCGAACCGCCTCCTCGGTCCGATCCGACCCCAATCTCCCTCGAAAACCGACTCAGGCCATTTCCAAGGCCTGCAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGATCTCTGAACGCCAATGAACAGGATCTCGTCCACATTTCCTTTAACATCACTCTCCAGCATCTCAACAAAGCCCTCTACTTCTCCTCTGGAATCTCCTCTCTGCAAATGGATCTTCGCGTACGCTCCGCCTACGATGCCTGTCTTGAACTACTCGACGACTCTGTCGACGCCCTTACCCGCTCCTTGCAGTCCGTCGCGCCCTCTTCCTCCAACGGCGGTCCTCAACGCCTTGGCTCCTCCGATGACGTCATCACCTGGCTCAGCGCTGCCCTTACCAATCAAGACACGTGTACGGACGGATTCTCCCAACTCTCCGGCTCTGTCAAAGACCAAATGGCCGATAAACTCCACAATTTGTCCGAACTCGTCAGCAATTGCTTGGCACTGTTTTCCGGCAGTGTAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGCCGGTTGATGAACGCCGGCGAAAACGAGGATGCTTCCGGTAACTTCCCCGGCTGGATGAGTCGGAGAGAGAGGAGGTTACTGACGTTGCCGGTGGGGGCGTTACAGGCCGATATTGTGGTTTCTCAGAACGGAAGCGGAACGGTGAAGACGATCGCGGAAGCGATAAAAAAGGCGCCGCAGTACAGTAACAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGGAAGAAATGGAACCTGATGTTTGTTGGGGATGGCAAGGGTAAAACTGTCATTTCCGGTGGTAAGAGCATCTTTGACAACGTCACAACCTTTCACACGGCGTCGTTTGGTAATAAATCTAACTTTCATTTATTTATTACACTTACTTCCTCTCTTTAA 1155 53.77 MGYGRLNETDPGGTSSDAPSHLSHHAASPNPRRRRLLLISLLSLILIVAAAVSATFLVGLRTASSVRSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYFSSGISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSNGGPQRLGSSDDVITWLSAALTNQDTCTDGFSQLSGSVKDQMADKLHNLSELVSNCLALFSGSVTSDFSGVPIQNKRRLMNAGENEDASGNFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKWNLMFVGDGKGKTVISGGKSIFDNVTTFHTASFGNKSNFHLFITLTSSL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 328292 330191 - Carg15066-RA Car16g00047 163199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00047 384 Pfam Pectinesterase 286 373 IPR000070 GO:0030599|GO:0042545
Car16g00047 384 MobiDBLite consensus disorder prediction 1 28 - -
Car16g00047 384 MobiDBLite consensus disorder prediction 9 23 - -
Car16g00047 384 Pfam Plant invertase/pectin methylesterase inhibitor 79 231 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00047 Car-Chr16:328292 Car17g00613 Car-Chr17:5775345 4.25E-41 dispersed
Car15g00960 Car-Chr15:7028201 Car16g00047 Car-Chr16:328292 2.42E-110 wgd
Car16g00047 Car-Chr16:328292 Car18g01228 Car-Chr18:11816241 0 wgd
Car16g00047 Car-Chr16:328292 Car02g00926 Car-Chr2:6557197 1.15E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00047 - - cmo:103503123 611.298