Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00056 ATGCATTCACTGGACAAGCTGCACCTCACTAATACCACCCGCAACTTCCTCCGACCATCGGACGCCGGAATGTGCGACCACACAACCATGATTAAGACCAAGAATGCTCGCCGGAGACGGCTCAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGAAGGTACACGCGGCAGAGGAAGGCGAGGGCGACGAATTACTCGAAAATGGAGTTTCGGAATCGAATTGTGATCCAGTACTACTCTTTGAGAACGAATCCATTTCGCCGTCTGATAGTGGAGTGTACAGTGAGATGTCGATCATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGGCGATTAATGATGAGAAGTACGATTTCTTCGCCGTGTACGACGGACACGGTGGCGCGCAGGTGGCGCAGGTGTGCCGCGAGCGTTTTCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGACGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGGCGAAGTGAGTAGCGGTGCTGCTGTGATGAAGACGGTCGGCTCGGCAGTGGTTTCCGCGGTGATCGGAAAGGAGGAGGTGGTGGTGGCCAACTGCGGCGATTGTCGAGCCGTTTTGGGTAGGGATGGAATTGCCTTGCCCTTGTCTAACGATCATAAGCCTGGCAGAGCTGATGAGTTGAAGAGAATTGAATCTGCTGGTGGGAGGGTCATAAACTGGAATGGCTACCGCGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTTAAACCATTTGTAATCTCCAAACCAGAAGTGACTGTGACCAAGCGAACCGAAAAGGATGAGTTCCTCATATTAGGAAGTGATGGTCTGTGGGACGTGATTTCGAACGAAATTGCCTGCAACGTAGTAAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCATTAAAGGTGGCGAATGACAGCCATGTCGCTGAAGCTGCAACAGTGTTGGTGGAGCTTGCGGTGGCTCGTGGAAGCAAAGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAAACAAACAGTTCTTCCTCTCCATGA 1110 50.99 MHSLDKLHLTNTTRNFLRPSDAGMCDHTTMIKTKNARRRRLRVRKLRYKWQRKVHAAEEGEGDELLENGVSESNCDPVLLFENESISPSDSGVYSEMSIIGRRKEMEDEVRVELGLTAINDEKYDFFAVYDGHGGAQVAQVCRERFHRIVAEEIVARGEMDEAEWTRLMERCFERMDGEVSSGAAVMKTVGSAVVSAVIGKEEVVVANCGDCRAVLGRDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTEKDEFLILGSDGLWDVISNEIACNVVRRCFGGKMKRISLKVANDSHVAEAATVLVELAVARGSKDNISVIVVDLRKTNSSSSP 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 379458 381993 + Carg15075-RA Car16g00056 163208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00056 369 Pfam Protein phosphatase 2C 95 353 IPR001932 -
Car16g00056 369 ProSiteProfiles PPM-type phosphatase domain profile. 93 360 IPR001932 -
Car16g00056 369 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00056 K14497 PP2C; protein phosphatase 2C [EC:3.1.3.16] - csv:101214188 570.466
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00113 Car-Chr15:657134 Car16g00056 Car-Chr16:379458 7.31E-80 dispersed
Car16g00056 Car-Chr16:379458 Car16g00143 Car-Chr16:821371 7.78E-72 dispersed
Car16g00056 Car-Chr16:379458 Car01g00043 Car-Chr1:228882 8.38E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g883 . . . . Bpe03g00182 . . . Cmo16g00068 . . . . . Sed07g0841 . Cpe14g00050 Bhi01g01472 Tan01g0125 Cmetu06g1353 . Hepe07g0077 Mch10g0077 . . . . . . . . Cone1ag0966 Cone5ag0672 . . . . . Cme06g01115 . Blo09g00035 . . . . . . . . . Cma16g00062 . Car16g00056 . . Cpe13g00356 . . . . . . . Cla05g00958 Cam05g1049 Cec05g1054 Cco05g1048 Clacu05g1042 Cmu05g0992 Cre05g1069 . Csa03g02203 Chy06g01234 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006690 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 1 1 1 1 1 1 1 2 3 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00056 Car_Chr16 FPKM 0.648094 0.0 0.420817 0.0 0.341152 0.111231 0.244774 0.0 0.0 0.0