Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00058 ATGATGGTCGATACGGGTGCATCGGAAAATCGTGCGCCGGTTGTTGATAAGCATCCGGAGAAAGATGAAGATGGTGGTTATGCCAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCGAGTCTCCGAGGAAAGAGGGCGACCATGGAAGATTTCTTTGATATTAAAATGTCAAAGGTTGATGGTCAAATAGTCTGCCTTTTTGGCATCTTTGATGGTCATGGTGGATACCGTGCTGCAGAGTTTTTGAAGGACCATCTCTTCGAGAATCTGATAAAGCACCCAAAATTTTTGATAGATACCAAATTAGCTATCAGAGAAACGTATCGACAGACGGATGCTGAATTTTTAAATTCCGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGTTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCGCGTACTATTATATCGAAGGGCGGTGAAGCCATCCCTCTTTCTGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGCGAATTGAAAATGCCGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCGATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGCTGCTTGTTCTCGCAAGCGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTACTAGTTGCGGGGAAAGAAGAGGGACCTGAGGCAGCTGCTCGGAAACTAACCGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGGTGAAGTTTCATCACGACAATGCAAGCACGGGTGTCGAAAACGACTAA 897 46.71 MMVDTGASENRAPVVDKHPEKDEDGGYASGGWKSEDGKLSWGYSSLRGKRATMEDFFDIKMSKVDGQIVCLFGIFDGHGGYRAAEFLKDHLFENLIKHPKFLIDTKLAIRETYRQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEEGPEAAARKLTEAAFTRGSADNITCIVVKFHHDNASTGVEND 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 387816 391360 + Carg15077-RA Car16g00058 163210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00058 298 MobiDBLite consensus disorder prediction 11 29 - -
Car16g00058 298 ProSiteProfiles PPM-type phosphatase domain profile. 40 286 IPR001932 -
Car16g00058 298 MobiDBLite consensus disorder prediction 1 31 - -
Car16g00058 298 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Car16g00058 298 Pfam Protein phosphatase 2C 45 279 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00584 Car-Chr15:3224526 Car16g00058 Car-Chr16:387816 4.32E-114 dispersed
Car16g00058 Car-Chr16:387816 Car16g00219 Car-Chr16:1235974 3.49E-58 dispersed
Car16g00058 Car-Chr16:387816 Car18g01219 Car-Chr18:11737181 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00058 K17506 - csv:101203681 566.614