Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00059 ATGACACGTCAGAACGCTGTCCACCCTGTAGTCACCACGTGGGAAAGCGTCGGCCCTACCTTTTTAACTCCGTTTTGTCCCGTAGCAGGAAAATCCCTGCTCCTAATTTTCCTTCCCTTCACTTTCGGTCTTCCCGCCCTCCGCCGCACAGTGCTCTGGAGATCGATAATGGGACTCTCCGGCCTGCTTTCCGGTCACCTGAACTCCGTACAAGGTTCCGATTTTCACAATTACACTTCATGGCTGAAACAATATCCCAGTGGTTTGGAATCGTTTGAGAGCATAATGAAAGAGCTACCGAGGAAGAAGATTGTGGTGTTCTTGGATTACGATGGAACCCTTTCTCCCATTGTGGATGATCCTGATCGAGCTTTCATGTCTCCTGAGATGAGAGAAGCTGTAAGAGAAGTGGCAAAATGCTTTCCAACAGCCATAATAAGCGGAAGAAGCCGAGAAAAAGTAAAGGAGTTCGTGAAATTGAGGAATCTGCACTATGCTGGGAGCCATGGATTAGACATTATGGCTCCAAATTCGGACAATGAGGCTAACGGGGTTTCCTATCAACCAGCCAAGAAGTTTTTACCAGAAATTCAACAAATAAAACGCGCATTAGAGGAAGAAAGTAGAAAGATCGAAGGTGCATTGGTGGAGGATAATACGTTTTGTGTTTCTGTACACTTTCGGCACGTGCACGAAAAGGATTTGGCGAAATTAGAAAAGAAGGTAGAGACTGTTATGGAAAACTATCCTGATTTTCATGTAACGCAGGGCAAAAAGGTTATGGAAATAAGGCCGACCATTAATTGGAACAAAGGGCATGCAATGGAGTATTATCTGCACACTCTCGGACATAACGACACGGACGATGTGGTTCCGTTGTACATTGGCGATGATCAAACAGACGAGGACGCTTTCAAGGTAATACAAAGGAAAGGACAAGGAATTGCGATACTCGTGGCATCCATTCCAAAGCACACAAACGCTTCCTACTCGTTGAAGGACCCATCGGAGGTTCTTGCTTTTTTGCTAAGGCTGGCCAGATGGAGGAACTCCACATCCCCTTCAATTACAACCCCATCTCCTAATATTTAA 1092 45.6 MTRQNAVHPVVTTWESVGPTFLTPFCPVAGKSLLLIFLPFTFGLPALRRTVLWRSIMGLSGLLSGHLNSVQGSDFHNYTSWLKQYPSGLESFESIMKELPRKKIVVFLDYDGTLSPIVDDPDRAFMSPEMREAVREVAKCFPTAIISGRSREKVKEFVKLRNLHYAGSHGLDIMAPNSDNEANGVSYQPAKKFLPEIQQIKRALEEESRKIEGALVEDNTFCVSVHFRHVHEKDLAKLEKKVETVMENYPDFHVTQGKKVMEIRPTINWNKGHAMEYYLHTLGHNDTDDVVPLYIGDDQTDEDAFKVIQRKGQGIAILVASIPKHTNASYSLKDPSEVLAFLLRLARWRNSTSPSITTPSPNI 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 392611 396366 + Carg15078-RA Car16g00059 163211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00059 363 Pfam Trehalose-phosphatase 107 336 IPR003337 GO:0003824|GO:0005992
Car16g00059 363 Coils Coil 197 217 - -
Car16g00059 363 Coils Coil 228 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00059 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101204169 438.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00059 Car-Chr16:392611 Car16g00713 Car-Chr16:4553202 3.55E-98 dispersed
Car16g00059 Car-Chr16:392611 Car16g00168 Car-Chr16:940193 2.53E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00059 Car_Chr16 FPKM 65.837074 74.601448 40.97636 42.230461 24.531586 23.79763 25.585667 48.634434 42.324593 40.541855