Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00071 ATGATGAAGAATAGCTTCATCTTCCTCGAGATTATATTGTTTTTAGCAATCATCTGGCCGGGGGTTCTCACTGAGCCAGTTGAAGACAAGCAAGCTTTGCTGGATTTCTTCCATACTATCCCCCACTCGCCTTCTCTCAATTGGAATGAGAATAGTTCTGTGTGCAATTCCTGGACGGGAGTGTTTTGCAACTCTGATGAGTCCAGAGTAGTAGCCCTACGATTACCCGGCAATGGTCTGCTCGGCCCTATCCCTGTGAATACTCTTAGCCGCCTATCTGCGCTGGAGACTCTAAGCCTTAGGTTGAATAGGATAACAGGACCTTTCCCTTCTGATTTTTCGAAGCTACAAAACTTGAGTTCCTTGTATCTGCAATACAACGAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAATTTGGAATAACCTTAGTGTCATTGATCTATCCAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAATTGAGTCATTTGACAGTTCTGAATCTTGCAAACAACTCGTTTACAGGCGAAATTCCGGACCTCGATATTCCGAGTTTGCAACGGTTAGATCTGTCTAATAATAATCTTACTGGAAATGTGCCTCATTCTCTTCAACGATTCCCGAGTTGGGTGTTCGTCGGTAACAATGTTACTGCAGAACATGTTGCCATTCCCCCATCTATTCCTCTCCAGCCTCCCAGTACTCAACCGACAAGAAAAGACAAAGGGCTAAGTGAATCTGCAATACTTGGTATTGCAATTGGTGGTTCTGTTATTGGGTTTCTTTTGCTAGTTGTTCTGTTGACTGCTTGTTGGTTGAAAAAGGGAAAAGAACTGAGTTCTTCCATGGAGACCAAAAAGAAGGAAACATTTGTGATGAAAAGGGGTTTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCGGCTGAGGTTCTTGGGAAGGGAACGTTCGGCGTGAGCTACAAGGCAGCTTTGGAGGACTCGACGACCGTGGTAGTGAAGAGGCTGAATCAGGTGAATGTTGGAAAGCGAGAATTTGAACAGCAGATGGAGTTGATTGGAAAAATTAAGCACGAGAACGTCGTTTCTTTACGAGCATACTATTATTCCAAGGATGAGAAGCTTACAGTCTATGACTACTATGGACAAGGGAGCGTGTCTGCAATGTTACACAGTAAAGAAGGAGATGGTTTACGTGCGTTAGATTGGGATACTCGGATGAAGATTGCGATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAAGGTTGCCATGGAAACATCAGAGCCTCAAACATTTTCCTCAACTCTAACGGATACGGCTGTGTATCCGACGTCGGGTTGGCTGCATTGATGAACTCAACTCCAGTACCAGCCACAAGAACTCCTGGTTACCGAGCGCCTGAATTGACCGACAGTCGTAGAGTATCGGAAGCAGCTGATGTGTACAGTTTTGGGGTGGTGCTGCTGGAGCTTCTGACTGGAAAGTCCCCCATACACGTTGAAGGTTGTAATGAAGTTGTTAATTTGGTGAGATGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTCGATGTGGAGCTTCTCAAGTATCCAAATATAGAAGAAGAAATGGTAGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCAGAGCAGAGGCCGAAAATGATGGATATCGCGTCGAGAATCGAGCAAGTTCGGCAACTGAGTACCGGAACCCGACCATCGACTGGGTCGAAATCAGCGTATTCGACTCCAGTTCATGTAATGGAAATCGGCTCGTCCTCACATTTACATTGA 1893 44.64 MMKNSFIFLEIILFLAIIWPGVLTEPVEDKQALLDFFHTIPHSPSLNWNENSSVCNSWTGVFCNSDESRVVALRLPGNGLLGPIPVNTLSRLSALETLSLRLNRITGPFPSDFSKLQNLSSLYLQYNEFSGPLPLDFSIWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFTGEIPDLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFVGNNVTAEHVAIPPSIPLQPPSTQPTRKDKGLSESAILGIAIGGSVIGFLLLVVLLTACWLKKGKELSSSMETKKKETFVMKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVNVGKREFEQQMELIGKIKHENVVSLRAYYYSKDEKLTVYDYYGQGSVSAMLHSKEGDGLRALDWDTRMKIAIGAARGLAHIHTENGGKGCHGNIRASNIFLNSNGYGCVSDVGLAALMNSTPVPATRTPGYRAPELTDSRRVSEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLKYPNIEEEMVEMLQIGLSCVAKMPEQRPKMMDIASRIEQVRQLSTGTRPSTGSKSAYSTPVHVMEIGSSSHLH 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 459309 461492 - Carg15090-RA Car16g00071 163223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00071 630 Pfam Leucine rich repeat 72 128 IPR001611 GO:0005515
Car16g00071 630 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672|GO:0006468
Car16g00071 630 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00071 630 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Car16g00071 630 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01181 Car-Chr2:8039599 Car16g00071 Car-Chr16:459309 0 dispersed
Car15g01139 Car-Chr15:8984359 Car16g00071 Car-Chr16:459309 0 dispersed
Car16g00071 Car-Chr16:459309 Car20g00263 Car-Chr20:1527659 0 dispersed
Car01g00961 Car-Chr1:9191283 Car16g00071 Car-Chr16:459309 1.18E-67 transposed
Car16g00071 Car-Chr16:459309 Car18g01209 Car-Chr18:11665514 0 wgd
Car16g00071 Car-Chr16:459309 Car02g00906 Car-Chr2:6443214 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89417 PF07714 PK_Tyr_Ser-Thr 1.30E-32 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00071 - - csv:101207123 1090.49