Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00072 ATGGAGGACATATGGGGTGCGTTCTGTGGAGGGTATGATTGTTCTAGTGGTACAGACAGACCTTGTGGTTTTGACTATGGATTTCTTTCTCATTCCTCTTCATGTATTACTCAAGCCTTGATCATTTCGTTTGATTTTCTACTTTTGATCTTGCTTGTTTCCAATATTGTGGGGAAGTCAATGAAAAGAGTTCACATGTCGAATCGAATTCGTGGCGGCTCGGGTTTGCTGAGTTTGTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTATCTTAGTTTAGGCATTTGGAGTTTGGTGGAGAAGTTGAGGAAAGATCACAGTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGCTCTATTATTAGCTGCTGGAGTAAACAGCTTCCAAGACCCTTCTTGCGCTTATTGTCCATTGTGGCATTCTTGTTTGCTGGGATTATTTGTATCCTTTCACTTTTTGATGCTGTTTCGAGCAAAATGGCATCAGCAAAGATGGTGTTAGATGTTCTATCTGTTCTAGGATCGGTTCTATTATTGTTTTGCTGTTTTGGATGTTTTAGTCTCCAAGATAGTGAGGAGAGCATCAATGGGAATGGTCTTTACACCCCATTAAATGGTGAGGCCAATGAAAGCGGTAAGCTTGATCCTGTTACTCCATTAGACAAAGCTGGATTGTTGGGTAAAATTTCGTTTTGGTGGATGAATCCTTTAATGAAAAGAGGGAAGAAGAAGACTCTCAACTGTGAAGATATACCGATGATGCGCGAGGCGGATCGAGCTGAAAGTTGTTACTTACAGTTCGTAAACCAAATGAATGAGCACAAAAGAAAAGAGCAAAGTTCCCAACCATCAGTCCTCAAAGTCATCCTTTCATGCCATCGGAGGGACATATTCTTGTCTGGATTTTTCGCTTTGTTGAAGATACTCTTCGTCTCTGCTGGTCCTCTGCTTCTTAATGCCTTCATTTTGGTCGCTCAGGGACATCAAAGCTTCAAATATGAAGGTCTTGTGCTTGCCATTTCACTTTTCTTCTCAAAAAGCATCGAATCCATATCACAAAGGCAATGGTACTTCAGAGCCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCTGCCATTTACAAGAAGCAATTGCGTTTGTCCAATGAAGCTAAGTTGATGCACTCGAGTGGCGAAATCATGAACTACGTCACGGTCGACGCCTATAGGATCGGAGAATTCTCATTTTGGTTCCATCAAACTTGGACCACGAGTGTTCAGCTCTGCATTGCACTTCTGATCCTCTACAAAGCAGTGGGAATTGCAGCCATTGCCTCCTTCATCGTGATAGTTCTATGCGTAGTTGGCAATACTCCAATTGCCAAGCTACAACATAAGTTTCAGAGTAAATTAATGGCAGCACAAGACGAGAGATTGAAGACGTTCACTGAGGCTCTTGTAAACATGAAAGTCTTGAAGTTATATGCTTGGGAAACCCATTTCAAGAATGTAATTGAGAATCTAAGAAAGGAAGAGCACAAGTGGTTGTCAGCCGTGCAGTATCGAAAGGGATATAATGGCATTCTCTTTTGGTCATCTCCTGTTATTGTCTCTATTGCAACCTTTGGAGCTTGTAGCTTTTTGAACATACCGCTACATGCCAATAATGTCTTCACCTTTGTGTCTGCATTGCGTCTTGTTCAAGAACCTGTTAGATCCATGGGGGATGTCATTGCGGCGATCATTCAAGCACGGGTCTCATTTACACGGATTGTTAACTTCCTGGAGGCACCTGAGCTGCAATGTTCAAGTGTTTGTAGAAAGCAAATAAAGATGAATGATGACTGCTCCATTCGGATCAGCTCAGCATCTTTCTCATGGGAAGAGAGTTCAATGAAGCCTACTCTTCATAACATTAATCTAGAGGTCAGGCCAGGTTCAAAGCTTGCAATTTGTGGAGAAGTTGGCTCAGGGAAATCAACTCTTCTAGCAGCCATTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTGAAGTTCATGGAAGGATTGCTTATGTGTCTCAATCAGCATGGATCCAAACAGGGTCCATTCGAGATAACATTTTATTCGGCTCTGAAATGGAGAATTGGAGATATCAAGAAACACTCGAGAAGTGTTCATTGGTGAAGGATCTTGAGTTACTCCCTTATGGTGATCTCACTGAGATTGGTGAAAGAGGAGTAAATCTCAGCGGTGGACAAAAGCAGAGGATTCAACTCGCACGAGCACTGTATCAAAATGCCGATATATATCTTTTGGATGATCCGTTCAGTGCTGTTGATGCTCATACTGCCACAAGCTTGTTCAATGGATATGTTGTGGAAGCTCTCTCGGGAAAAACAGTTCTTCTTGTGACTCATCAAGTTGATTTCCTGCCTGCTTTTGATTCTGTCCTGCTGATGTCCGACGGGGAAATTCTAGAAGCGGGCCCTTACGATCAGTTGTTGGCACATAGCAAAGAATTTCAGGACCTTGTCAATGCACACAAAGAGACTGCTGGTACTGAAAGGCTTGCAGATTTCTCTGCTATCAAGAGCTTAAGAACATCTTGTAAAGAGATTAAGACATCTTATACAGAGAAGCTGTCTGTAGCAGCATCTGATGATGCTAATCAGTTAATCAAGCAGGAGGAACGCGAAGTGGGGGACTCTGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTATTCTTTTCCTTGGATGTTCTCTCCCATTTAGCATTTGTGGCATGTGGGATAACGCAAAACTCTTGGATGGCTTCCAACATTGACAGTCCCAATGTCAGCAACACACGCTTGATCGTAGTTTACTTGTTGATTGGAGTTTCTTCAATATCATTCTTGGTTGCTAGATCAGTTTTAACAGCTCTTTTGGGATTGCAATCATCAAAATCATTGTTTTCTCAGCTACTCACGTCTCTTTTTCGCTCGCCGATGTCCTTCTATGACTCCACACCTCTTGGAAGGATACTCAGTCGGGTCTCAATGGATCTTAGCATCGTTGATCTTGATGTCCCATTTAGCTTAATATTTGCTGTGGGTGCGACCGCCAATGCTTATGCTGCTCTTGGAGTTTTAGCCGTCATCACCTGGCAAGTTCTGTTCATCTCCATACCAACAATCGTTTTGGCAATTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAATGGAACAACGAAGTCAATAGTAGCTAACCATTTGTCGGAATCCATAGCTGGAGCAGTGACAATTAGAGCTTTTGCAGAGGAAGAGCGATTCTTTAAGAAAAATCTTGAATTTGTTGATGGAAATGCCAGTCCATTTTTTCACAATTTTTCAGCCAACGAGTGGCTGATACAGCGGTTAGAGATGCTCAGCGCAGTGGTTCTTGCCTCCGCTGCCTTTTGCATAGTGTTGCTACCGACTGGAAGCTTCAGCCCTGGTTTCGTTGGAATGGCACTCTCTTATGGCCTTTCTTTGAATGTATCACTGGTCTTCTCCATCCAGAATCAATGTAATCTAGCCAATCACATCATTTCTGTAGAGAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCTGAAATTATCGAAGAAAACCGTCCCCCGACCAACTGGCCTTCTGTCGGAAAAGTGGAGATAATCGACTTGAAGATTCGGTACAGACCCAATTCGCCCCTTGTTCTTCATGGTATTAGCTGCACGTTTGAAGGAGGACATAAGATTGGGATTGTTGGTCGAACTGGGAGTGGGAAATCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCGGGAGGGAAGATTTTAGTGGATGGTATCGATATCTGCTCGATTGGACTTCATGACCTGCGTTCACGCTTTGGAATTATACCTCAAGATCCAACCCTCTTTAAAGGGACTGTTAGATACAATTTGGACCCCTTAGTTCAGCATTCTGATGATGAAATATGGGAGGTTCTTGGAAAGTGTCAACTCAGAGAGGCTGTGGAAGAGAAAGAAGCGGGATTGGATTCCTTGGTTGTGGAAGATGGCTCAAACTGGAGCATGGGACAGCGCCAACTTTTCTGTTTGGGACGTGCGCTGTTGAGGAGAAGTCGAATATTAGTGCTTGACGAAGCAACTGCCTCGATCGACAATGCCACGGATATGATTCTGCAGAAAACTATTCGATCCGAGTTCGCAGACTGTACTGTGATTACAGTTGCTCATAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATCAGTGATGGGAGAATAGCAGAATATGACGAACCGAGCACATTGATCAAGAGAGAAGGGTCTCTATTTGGACAGCTTGTGAAAGAATACTGGTCTCACTCACCATCTGCAGAATGA 4440 43.09 MEDIWGAFCGGYDCSSGTDRPCGFDYGFLSHSSSCITQALIISFDFLLLILLVSNIVGKSMKRVHMSNRIRGGSGLLSLSAIFNGCVGLVYLSLGIWSLVEKLRKDHSALPLQLWLSASFHGFTWLLVSSIISCWSKQLPRPFLRLLSIVAFLFAGIICILSLFDAVSSKMASAKMVLDVLSVLGSVLLLFCCFGCFSLQDSEESINGNGLYTPLNGEANESGKLDPVTPLDKAGLLGKISFWWMNPLMKRGKKKTLNCEDIPMMREADRAESCYLQFVNQMNEHKRKEQSSQPSVLKVILSCHRRDIFLSGFFALLKILFVSAGPLLLNAFILVAQGHQSFKYEGLVLAISLFFSKSIESISQRQWYFRARLVGLKVRSLLSAAIYKKQLRLSNEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSVQLCIALLILYKAVGIAAIASFIVIVLCVVGNTPIAKLQHKFQSKLMAAQDERLKTFTEALVNMKVLKLYAWETHFKNVIENLRKEEHKWLSAVQYRKGYNGILFWSSPVIVSIATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVIAAIIQARVSFTRIVNFLEAPELQCSSVCRKQIKMNDDCSIRISSASFSWEESSMKPTLHNINLEVRPGSKLAICGEVGSGKSTLLAAILGEIPNVEGNIEVHGRIAYVSQSAWIQTGSIRDNILFGSEMENWRYQETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVVEALSGKTVLLVTHQVDFLPAFDSVLLMSDGEILEAGPYDQLLAHSKEFQDLVNAHKETAGTERLADFSAIKSLRTSCKEIKTSYTEKLSVAASDDANQLIKQEEREVGDSGFKPYIQYLNQNKGFLFFSLDVLSHLAFVACGITQNSWMASNIDSPNVSNTRLIVVYLLIGVSSISFLVARSVLTALLGLQSSKSLFSQLLTSLFRSPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATANAYAALGVLAVITWQVLFISIPTIVLAICLQRYYFASAKELMRLNGTTKSIVANHLSESIAGAVTIRAFAEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFVGMALSYGLSLNVSLVFSIQNQCNLANHIISVERLNQYMHLSSEAPEIIEENRPPTNWPSVGKVEIIDLKIRYRPNSPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPLVQHSDDEIWEVLGKCQLREAVEEKEAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPSTLIKREGSLFGQLVKEYWSHSPSAE 1479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 466092 471951 + Carg15091-RA Car16g00072 163224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00072 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1469 IPR003439 GO:0005524
Car16g00072 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 847 IPR003439 GO:0005524
Car16g00072 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Car16g00072 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car16g00072 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car16g00072 1479 SMART AAA_5 651 824 IPR003593 -
Car16g00072 1479 SMART AAA_5 1261 1453 IPR003593 -
Car16g00072 1479 Pfam ABC transporter transmembrane region 308 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car16g00072 1479 Pfam ABC transporter transmembrane region 920 1178 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car16g00072 1479 Pfam ABC transporter 1252 1400 IPR003439 GO:0005524
Car16g00072 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00072 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2555.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00072 Car18g01208 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00072 Car-Chr16:466092 Car17g01264 Car-Chr17:9602120 0 dispersed
Car07g00064 Car-Chr7:410171 Car16g00072 Car-Chr16:466092 0 transposed
Car08g00644 Car-Chr8:4151466 Car16g00072 Car-Chr16:466092 2.04E-15 transposed
Car16g00072 Car-Chr16:466092 Car18g01208 Car-Chr18:11653283 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00072 Car_Chr16 FPKM 0.0 0.0 0.0 0.0 6.666543 5.881858 7.916475 0.0 0.0 0.0