Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00075 ATGTCACAGGTGGTGGCTACGAGATCGATTCACAGCACATTCCTGTGTCCCAGCTCGGGATCCGTGCAAGACCGAGTAGACAGGGCTCGGTCTTTTGGTATTGGCTCCAAACTGTTGGGGCATGAGAAGAAGAGTTGGAATTTTGCATACAGGAGAAGTCTAATCACATCCAAGGGAGCTACTCAAGCTGAAGTTGTTCCGGTATCACCTGAGGATGTTCAGAAGCCTTCATTGGCTGCTAAATTTCAATTTTCACGTCTTAATACCATTCTGAATCTTACTTATCAGGCAGATGAACAATTTGAACATTTACGAGCAGTTCAACAACTTGGTGATACACCGGTTGGTATGTGGTCCAAGCCAACAGTTAGACGTAAGACAAAAATTGTGTGTACGATTGGACCTTCGACTGACACGAAGGAAATGATTTGGAAACTGGCTGAAGCTGGAATGAATGTTGCTCGATTGAACATGTCTCACGGAGACCATGCATCTCATCAGAAAGTTATAGATTTAGTCAGAGAATACAACGCCCAATCACAAGACAATTGCATTGCAATCATGCTAGACACCAAGGCAAGCTATTTGTATCCCCATATTCAATACATTCATTTCATTAACCCAGCAATAACTGGTCCTGAGGTTAGGAGTGGTGACCTACCACAACCAATATTGTTAGAAAGTGGTCAGGAATTCACTTTCACCATACGGAGGGGTGTTAGCACTGCAGATTCTGTTAGTGTGAACTATGATGACTTTGTTAATGATGTAGAAGTTGGGGACATGATTCTTGTTGATGGTGGAATGATGTCGTTGATGGTGAAGTCTAAAACAGAGAATTCTGTCAAGTGTGAAGTTGTTGATGGAGGAGAGCTCAAGTCCAGGCGACATTTAAATGTTAGAGGGAAAAGTGCAACACTGCCTTCCATTACTGAGAAGGATTGGGATGATATTAAATTTGGAGTTGACAACAAAGTTGATTTTTACGCTGTCTCTTTCGTCAAGGATGCACAAGTAGTTCATGAGTTGAAGAAATATCTTAAGAGCTGTGATGCTGATATTCATGTGATTGTAAAAATAGAAAGCGCAGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCAAGAGGTGATCTTGGTGCCGAACTCCCTATTGAAGAGGTTCCACTTCTGCAGGAGGAGATAATCAACCTGTGTCGAGGCATGGGGAAGGCTGTCATTGTGGCTACTAACATGCTTGAGAGTATGATTGTACATCCGACACCAACCAGAGCAGAAGTATCTGACATTGCTATTGCAGTTAGAGAGGGTGCAGATGCAATCATGCTGTCTGGAGAAACTGCTCATGGAAAATTCCCGTTAAAAGCTGTGAAAGTAATGCATACAGTTGCCTTACGGACTGAAGCAACCATAGAAGGTGGTCGAATGCCATTGAATCTTGGTCAAACATTCAAGAATCATATGAGCGAGATGTTTGCTTATCATGCAACTATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAGAACCGGTTTCATGGCTATCCTCCTCAGCCATTATCGGCCATCTGGGACGACATTTGCCTTTACAAATGATAAAAGGATACAACAAAGGTTGGCTTTATACCAGGGAGTGTGCCCCTTATACATGCAATTCTCCGATGATGCTGAGCAGACCTTTAGCGATGCCTTATCTATGCTGCAGAGGCAAGGAATGGTGAAGGAAGGAGAAGAGGTAGCACTCGTTCAGAGTGGCAAACAACCCATATGGCGGTTCCCATCTACTCACAATATTCAAGTCCGTAAAGTGTAG 1842 43.11 MSQVVATRSIHSTFLCPSSGSVQDRVDRARSFGIGSKLLGHEKKSWNFAYRRSLITSKGATQAEVVPVSPEDVQKPSLAAKFQFSRLNTILNLTYQADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTDTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVREYNAQSQDNCIAIMLDTKASYLYPHIQYIHFINPAITGPEVRSGDLPQPILLESGQEFTFTIRRGVSTADSVSVNYDDFVNDVEVGDMILVDGGMMSLMVKSKTENSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKKYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPLYMQFSDDAEQTFSDALSMLQRQGMVKEGEEVALVQSGKQPIWRFPSTHNIQVRKV 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 477191 482656 - Carg15094-RA Car16g00075 163227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00075 613 Pfam Pyruvate kinase, barrel domain 125 479 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Car16g00075 613 ProSitePatterns Pyruvate kinase active site signature. 354 366 IPR018209 GO:0004743|GO:0006096
Car16g00075 613 Pfam Pyruvate kinase, alpha/beta domain 501 593 IPR015795 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00075 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101206887 1062.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00961 Car16g00075 CCT
Car16g00075 Car18g01207 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00075 Car-Chr16:477191 Car19g00323 Car-Chr19:5035310 0 dispersed
Car16g00075 Car-Chr16:477191 Car18g01207 Car-Chr18:11646840 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00075 Car_Chr16 FPKM 0.071657 0.096014 0.107915 0.0 0.0 0.0 0.0 0.08429 0.0 0.0