Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00078 ATGGCTGACCAACCAGGCGGGCTGGATTCGGTTATTAACAAGATCTCCGGTAAGATCGACGGCTACAATTCTTCCTCTTCCTCCGGCTCTGATGATGGCCACCCTTCAAAAATCAATGCTGTAAAATCCCACGTTTTTAGGCTCTTCGGTAGAGATAAGCCCGTTCACACGGTCTTGGGCGGTGGAAAACCTGCTGATGTTCTTCTTTGGAGGAACAAGAAGAACTCTGCAGGCATCCTTGGGGGTGCCACTGCCTTGTGGATTCTTTTTGAGTTGCTTGAGTACCAATTAGTCACTCTCGTATGCCATATATTAATTCTTGTACTGGCTCTAGTTTTCACGCGGTCTTATGCCAGTTCGTTTATCAACAAGTCCCCACCGCAAATCCCAGATTTTAGACTTCCTGAAGATCGTCTACTCGAGGTTGTCTCTGCACTGAGAATCGAAATCAACCATGTAATCTCCAATTTACGTAACATTGCTTCTGGGAGAGATTTGAAGAAATTCCTCCGTGCTTTTATTGGCTTATGGGTTCTATCAATGGTTGGAAGCTGGTGCAATTTTCTGACCTTGTTATACACATCCGTTGTATTGCTACACACTGTGCCAGTGCTATATGAGAAGTATGATGACCAGGTTGACGCATTTGCTGAGAAGGCTTTGATAGAGGTCAAGAAGCAGTATGCTGTATTTAACGCCGAAGTTCTGAGTAAAATCCCGATGGGGGCACTCAAAGAGAAGAAGAAGGATTAG 753 45.02 MADQPGGLDSVINKISGKIDGYNSSSSSGSDDGHPSKINAVKSHVFRLFGRDKPVHTVLGGGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLVTLVCHILILVLALVFTRSYASSFINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLSMVGSWCNFLTLLYTSVVLLHTVPVLYEKYDDQVDAFAEKALIEVKKQYAVFNAEVLSKIPMGALKEKKKD 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 500014 501828 - Carg15097-RA Car16g00078 163230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00078 250 ProSiteProfiles Reticulon domain profile. 64 250 IPR003388 -
Car16g00078 250 Pfam Reticulon 65 220 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00078 - - - csv:101206170 389.808
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00078 Car18g01204 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01134 Car-Chr15:8943571 Car16g00078 Car-Chr16:500014 1.61E-92 dispersed
Car16g00078 Car-Chr16:500014 Car16g00434 Car-Chr16:2701948 1.58E-61 dispersed
Car14g01872 Car-Chr14:14483971 Car16g00078 Car-Chr16:500014 1.18E-92 wgd
Car16g00078 Car-Chr16:500014 Car18g01204 Car-Chr18:11630579 4.23E-115 wgd
Car16g00078 Car-Chr16:500014 Car06g00886 Car-Chr6:6893392 3.64E-87 wgd
Car16g00078 Car-Chr16:500014 Car08g00768 Car-Chr8:5030268 8.69E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g805 . . . . . . . . Cmo16g00092 Cmo18g01314 . . . . Sed02g1696 . Cpe14g00072 Bhi01g01424 Tan01g0175 Cmetu06g0839 . Hepe07g0108 Mch10g0110 . Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Cone1ag1201 . . . Lsi05g01177 Csa05g00229 Chy09g01271 . . . . . . Bpe12g00371 . . . . . Cma16g00088 Cma18g01285 Car16g00078 Car18g01204 Cpe09g00055 . . . . . . . . Cla05g00931 Cam05g1018 Cec05g1022 Cco05g1018 Clacu05g1007 Cmu05g0960 Cre05g1041 . Csa03g02171 Chy06g01283 Cme09g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000326 4 3 4 3 4 4 7 4 4 5 4 4 7 3 4 7 4 9 7 4 4 4 4 4 4 4 4 6 4 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00078 Car_Chr16 FPKM 6.70948 6.565608 2.269797 2.817837 8.665648 6.071621 7.742598 0.316558 0.061689 0.19876