Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00082 ATGGCAACTTCGGAAGAGAATAGTGCATTGTTCCCGATATTTATTTTGACAATAATGGCACTGCCTTTAGTGCCTTATACTATTCTTAAGCTTTGTCGCGCTGCTTCGAAGAAGGCAAAGATTATACATTGCCAGTGTTCTGAGTGCTCCCGTTCAGGGAAGTTCCGCAAGTCAATATTTAAGCGAATAGCAAATTTCTCAACTTACAGCAACTTGACATTGGTACTTCTTTGGATCTTCATGTTCGTGTTGGTCTATTACATTAAAAATATGAGCCGGGAGGTAAATTACCTTGAATCTTTAATGAGGAAAAAAAAATATATCCTACTGAATGTTATTTTGTTTTGGTTTTTCCCATTCGATACTTTTGAAAGTAATTATTTTCCGCATGCTAAAAAATATGTTAGACCTAATGTTGGAGTGAAAGATAATTTTATGATAACTGCACAGATTCAAGTCTTCGAGCCATTTACTATTCTAGGATTGGATACTGGGGCTTCGGAGGCAGACATAAAGAAGGCATACAGGAGACTTTCTATCCTATACCATCCAGATAAAAATCCAGATCCAGAGGCCCATAAGTATTTCGTGGAGTTCATATCTAAGGCTTATCAAGCTTTAACAGATCCAATATCCCGTGAGAATTATGAAAAATATGGCCATCCAGATGGCAAGCAGGGGTTTCAAATGGGAATTGCACTCCCTCAATTCTTACTAAATATTGATGGGGCATCTGGTGGGATACTTTTACTGTGGATTGTTGGAGTTTGTATTATCTTGCCCTTGGTAATAGCCGTTATATATCTTTCAAGGTCGTCAAAATACACTGGAAACTATGTCATGCGTCAGACACTTTCCACATATTATTACTTCATGAAGCCTTCTTTGGCACCAAGCAAAGTAATGGATGTCTTTATAAAGGCAGCTGAGTATGTGGAAATGCCAGTTCGTAGAACTGATAACGAGCCTCTTCAGAAGATATTTGGACTAGTTAGGAGTGAGTTGAATCTTGACCTCAAGAACATTAAACAAGAGCAGGCAAAGTTTTGGAAGCAACATCCAGCCCTTGTCAAGACACAATTGTTGATTCAAGCTCAATTAACTCGTGAATTTGCCAACTTGCCTCCACCTTTGGATGGTGACTTTAAACTTGTGCTGGAACTTGCCCCTCGCCTTCTTGAAGAATTAATGAAGATGGCACTGATCCCACGGAATGTCCAAGGACAAGGATGGCTACGTCCTGCAACTGGGGTCATTGAGCTCTCACAATGTATCATTCAGGCTGTACCTCTCAGTGCAAGAAAGGCCACTGGAGGATCGTCTGAAGGTATTGCACCATTTCTACAGTTGCCGCATTTTAGCGAGGCTGTCGTCAAGAAGATAGCCCGCAAGAAAGTGAGAGCGTTTGAGGATCTTCAAAAACTTTCTCAAGAAGAACGTGCCGAGCTGCTTGCTCAAGTGGGTGGTTTTTTGCCTGGTGAAGTCCAAGATGTTGAAACAGTGCTGGAAATGATGCCGTCCGTGACAGTTGCTATCTCATGTGAAACAGAAGGCGAAGAGGGTATCCAAGAGGGTGATACTGTCACCATTCAGGCATGGGTGACACTCAAACGCCGAAATGGGCTGGTGGGTGCTCTCCCCCATGCCCCCTACTACCCATTTCACAAAGAAGAGAACTTCTGGTTCCTGCTTGCAGATCCGAATTCAAACAATGTCTGGTTTTACCAGAAGGTTAGTTTCATGGATGAGGCTACGGCCATAACTGTCGCTTCCAAGGCGATCGAGGAACAAATGGAGGGATCTGGAGCAAGTGTGAAGGAAACCAGTGCTGCAGTTAGGGAAGCAGTGGAGAAGGTGAAAGCGGGATCTAGACTGGTACTAGGCAAGTTCCACGCCCCAGCTGAGGGGAACTACAATTTAACTTGCTACTGCCTGTGTGATTCTTGGATCGGTTGCGATAACAAGACAAACCTGAAACTGAAAATCTTGAAACGAACCCGTGCGGGTACCCGTGGTGGCTTTATGGCAGAAGAAGGGCCATCCATGGAAGATGGAATTGAAGAGGAAGAGGAAAATGATGAAGAAGAATACGAGGATTACGAGAGTGAGTACAGTGAAGATGAAGCTGATGAACAAGATGTGAAAAAGAAGGGCCCCGTTGCCAATGGAAAAGCACGTAAGCAGCAGAGTTCAAGTTCTGAAGACTCTGGCTCTGATGATGAATGA 2226 43.26 MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCSECSRSGKFRKSIFKRIANFSTYSNLTLVLLWIFMFVLVYYIKNMSREVNYLESLMRKKKYILLNVILFWFFPFDTFESNYFPHAKKYVRPNVGVKDNFMITAQIQVFEPFTILGLDTGASEADIKKAYRRLSILYHPDKNPDPEAHKYFVEFISKAYQALTDPISRENYEKYGHPDGKQGFQMGIALPQFLLNIDGASGGILLLWIVGVCIILPLVIAVIYLSRSSKYTGNYVMRQTLSTYYYFMKPSLAPSKVMDVFIKAAEYVEMPVRRTDNEPLQKIFGLVRSELNLDLKNIKQEQAKFWKQHPALVKTQLLIQAQLTREFANLPPPLDGDFKLVLELAPRLLEELMKMALIPRNVQGQGWLRPATGVIELSQCIIQAVPLSARKATGGSSEGIAPFLQLPHFSEAVVKKIARKKVRAFEDLQKLSQEERAELLAQVGGFLPGEVQDVETVLEMMPSVTVAISCETEGEEGIQEGDTVTIQAWVTLKRRNGLVGALPHAPYYPFHKEENFWFLLADPNSNNVWFYQKVSFMDEATAITVASKAIEEQMEGSGASVKETSAAVREAVEKVKAGSRLVLGKFHAPAEGNYNLTCYCLCDSWIGCDNKTNLKLKILKRTRAGTRGGFMAEEGPSMEDGIEEEEENDEEEYEDYESEYSEDEADEQDVKKKGPVANGKARKQQSSSSEDSGSDDE 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 514685 518880 + Carg15101-RA Car16g00082 163234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00082 741 Coils Coil 683 717 - -
Car16g00082 741 MobiDBLite consensus disorder prediction 681 708 - -
Car16g00082 741 ProSiteProfiles dnaJ domain profile. 155 220 IPR001623 -
Car16g00082 741 Pfam DnaJ domain 156 217 IPR001623 -
Car16g00082 741 Pfam Sec63 Brl domain 278 658 IPR004179 -
Car16g00082 741 Coils Coil 458 478 - -
Car16g00082 741 MobiDBLite consensus disorder prediction 672 741 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00082 K09540 SEC63, DNAJC23; translocation protein SEC63 - csv:101209193 1192.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00082 Car18g01191 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00082 Car-Chr16:514685 Car16g00737 Car-Chr16:4658987 8.15E-13 dispersed
Car13g00915 Car-Chr13:9441699 Car16g00082 Car-Chr16:514685 1.65E-07 transposed
Car16g00082 Car-Chr16:514685 Car18g01191 Car-Chr18:11509338 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g785 . . . Bda07g01902 Bpe03g00158 . . Bma14g02040 Cmo16g00097 Cmo18g01308 . . . . . . Cpe14g00076 . . . . . . . . . . . . . . . . Cone14ag0052 Cone15ag0058 Lsi05g01183 . . Cme06g01046 . Blo09g00057 . . . . . . . . . Cma16g00092 Cma18g01277 Car16g00082 Car18g01191 Cpe09g00060 . . . . . . . . Cla05g00924 Cam05g1012 Cec05g1016 Cco05g1012 Clacu05g1001 Cmu05g0954 Cre05g1035 . Csa03g01758 Chy06g00986 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005404 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00082 Car_Chr16 FPKM 22.271425 26.121525 50.53595 50.483032 22.661768 20.614206 21.419596 27.557775 23.02109 25.605597