Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00093 ATGGCGATCTCCAAACTCCTCTTTCTCCTTCTTCTTTTCCTTCCTTTTCTTTCTGCTGATGTTGTTCCCTCTGACATTTATCTTCTCAGCTGCGGATCATCCTCCAATTCCTCCTTCTTTAATCGCGTCTTCGTTGGCGATTCATTGAAACCCGCCTCCGGCTTTCTCGTCGCCGGCCGTTCGGTGGCGGTTTCCAATCGGAATCCACCTCCGGATTCTACCTCTTTGTATCACACAGCTAGAGTTTTCACCAGGGCCTCAAGCTACAAATTCAACCTCAAGAAGAACGGTACTCACTTGCTACGGTTCCATCTTTCGCCATTTTCGGCGCTGGAATTCGATTTACATTCTGCAAAATTCACTATCTCCGCCAATGGCTTGTTGCTTTCTAATATTTCTCACGTTAACGATTCTGTAATTAAAGAGTTCATCGTGAGAATTGACGCCAACGTGCTTGAAATCGAGTTCGAACCGGTTTCGGGTTCGGGTTTAGGATTCGTGAATGCAATCGAGGTATTTTCAGCCCCTAAAGAACTCATAACCGATAATGGAGCTAAGCTTGTGGATTCTAACGGAGTTCGAGAATATTACAAACTCACATCGCAAGTCTTGGAAACCAAATACAGAATTAACGTTGGGGGTTCCAAATTGACCCCGTTTAACGACAGTCTTTGGAGAACTTGGGTGCCCGATGAGCCTTATCTGGTTATAAAGTCGGCGGCAAAGCTTGCCTCAACTTTTCAGGCTCCGTACTATCAGGCCGGCTGCGCCACTCGGGAGGATGCGCCGGACATTGTTTACATGACGGCGCAACAGATGAACAAGGACATCGCAGTTTTGGGTGCGAAATTTAACCTCACCTGGAAGTTTCCATTGGATTCTAATGGCATGAAGTACTTGGTTCGCTTGCATTTCTGTGATATTGTTAGCTTTGCTCTTAATCAGTTGTATTTCAATGTGTATATCAATGGCTATCCTGCATATAGGGACCTGGATTTGTCATCTCTTTCCTCTCGGCTATTAACTCCTTTTTATTTTGATTTCATTGTGGATTCTGATGGTTCTGGAAATATTCAAATAAGTGTTGGACCGTCTGATCTGAGCAGTTCTTTGGGATATAATGCGATCTTAAATGGAGCAGAGATCATGGAGATGGTGAGTGCTAGGGGTATGTTTTCAGAAACTGAGAAGAAAAAGAGAAATTCATGGGTCATTGTAGGTCCTATTGTTGGTGGATTCGTTGGTTTATGTCTGGTTTTTGCTGCAATTCTTGCTTTGGTATGCAAGAGGAGAAAGAATCGGACGCCGAGGCGGGCGGAGAGCGCAGGCTGGACTTCGGTTCAGGCATATGCAGGTGGCAGTTCTGATAGTAAATTATCAAGGGGATCAACTCTTGCATCTTTTGGGCCAAATGGATACCACAACTTGAAGATCCCCTTCACTGAAATTCAGTCAGCAACAAACGATTTCGACGAGAGTTTGATCATTGGTTCGGGCGGATTTGGTATGGTTTACAAAGGGGTTCTTAGGGACAATATAAATGTTGCTGTGAAGAGAGGTGTGCCAGGATCAGGGCAGGGCCTTCCTGAATTCCACACTGAGATAGCTATCTTGTCCAAGATTCGACATCACCATCTTGTTTCACTTGTTGGATACTGCGAAGAACAGTCAGAAATGATACTGGTTTATGAATATATAGAGAAAGGTCCACTGAAAAAGCAATTGTATGGCTCGGTCGTGTCGCCTTTGTCGTGGAAACAACGACTCGAAATCTGCATTGGTGCAGCCAGAGGTCTTCACTACCTCCACACTGGTTTTGCACAGGGCATCATCCACCGCGATATCAAGTCGACCAACATTTTACTGGATGAGAGCTTTGTTGCTAAAGTTGCCGATTTTGGTCTTTCAAGATCCGGGCCTCGTCTCGACGAGACACACGTTAGTACGGGAGTAAAAGGTAGCTTTGGCTATCTTGATCCAGAGTATTTTCGAAGACAACAACTCACTGATAAGTCGGATGTATATTCATTTGGAGTAGTGCTCTATGAAGTTCTTTGTGCTAGGCCTGCTGTTGATCCATTGCTTGATAGGGAACAAGTAAATCTCGCCGAATGGGCGCTGCATTGGCAAAGGAAAGGAATGCTTGAAAAGATCATCGATCCACATTTGGTCGGGAAAATCAATCCGAGTTCGTTAAGGAAATATGGAGAAACAGCAGAAAAATGTTTGGCTGACTATGGAATTGACAGACCAACAATGGGAGATGTCTTGTGGAACTTGGAATATGTTCTTCAACTACAAATCGAGCCACTGATCGAGCCAACAGAACCCGTAGATGTCGATGAATCCAACTTTCCGACGTCCACCGCAACTCATCCAAGCGACTTGAGGAGACATTCAGATGAAGGTACTGGTAACTATTCAGACATAAGTACAACCAAAGTTTTCTCCCAGTTGCTTACTAATGATGGAAGATAG 2478 44.59 MAISKLLFLLLLFLPFLSADVVPSDIYLLSCGSSSNSSFFNRVFVGDSLKPASGFLVAGRSVAVSNRNPPPDSTSLYHTARVFTRASSYKFNLKKNGTHLLRFHLSPFSALEFDLHSAKFTISANGLLLSNISHVNDSVIKEFIVRIDANVLEIEFEPVSGSGLGFVNAIEVFSAPKELITDNGAKLVDSNGVREYYKLTSQVLETKYRINVGGSKLTPFNDSLWRTWVPDEPYLVIKSAAKLASTFQAPYYQAGCATREDAPDIVYMTAQQMNKDIAVLGAKFNLTWKFPLDSNGMKYLVRLHFCDIVSFALNQLYFNVYINGYPAYRDLDLSSLSSRLLTPFYFDFIVDSDGSGNIQISVGPSDLSSSLGYNAILNGAEIMEMVSARGMFSETEKKKRNSWVIVGPIVGGFVGLCLVFAAILALVCKRRKNRTPRRAESAGWTSVQAYAGGSSDSKLSRGSTLASFGPNGYHNLKIPFTEIQSATNDFDESLIIGSGGFGMVYKGVLRDNINVAVKRGVPGSGQGLPEFHTEIAILSKIRHHHLVSLVGYCEEQSEMILVYEYIEKGPLKKQLYGSVVSPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDESFVAKVADFGLSRSGPRLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLYEVLCARPAVDPLLDREQVNLAEWALHWQRKGMLEKIIDPHLVGKINPSSLRKYGETAEKCLADYGIDRPTMGDVLWNLEYVLQLQIEPLIEPTEPVDVDESNFPTSTATHPSDLRRHSDEGTGNYSDISTTKVFSQLLTNDGR 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 575153 577630 - Carg15115-RA Car16g00093 163245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00093 825 MobiDBLite consensus disorder prediction 777 809 - -
Car16g00093 825 ProSiteProfiles Protein kinase domain profile. 490 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00093 825 Pfam Malectin-like domain 29 384 IPR024788 -
Car16g00093 825 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Car16g00093 825 Pfam Protein tyrosine and serine/threonine kinase 496 686 IPR001245 GO:0004672|GO:0006468
Car16g00093 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00093 - - - csv:101211413 1402.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00093 Car18g01174 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00344 Car-Chr2:2488386 Car16g00093 Car-Chr16:575153 1.24E-18 dispersed
Car16g00093 Car-Chr16:575153 Car17g00766 Car-Chr17:6777947 0 dispersed
Car04g01880 Car-Chr4:10903728 Car16g00093 Car-Chr16:575153 0 transposed
Car16g00093 Car-Chr16:575153 Car18g01174 Car-Chr18:11456071 0 wgd
Car16g00093 Car-Chr16:575153 Car08g00774 Car-Chr8:5061916 2.94E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89419 PF12819 Malectin_like 3.50E-33 CL0202 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00093 Car_Chr16 FPKM 1.428716 1.424606 4.261056 4.061051 34.153595 33.66713 37.253246 7.302848 5.642555 6.020813