Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00096 ATGAGACCTCCACGAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAAGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAGTTGAATACCGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCGGCCGTTCTTGGTGGTGTTGATGACATTTGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGTCCGACTGGTATTGTGTATGCCGTTGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCCGGTGGTCATTTTGTTATATCAATCAAGGCAAACTGTATCGACTCAACCGTTCCTGCTGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGTATCTATCGGGCGCCAAAGAAACAGAAGGCTGCAGCTTAA 915 47.43 MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 591438 595150 - Carg15118-RA Car16g00096 163248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00096 304 Gene3D Vaccinia Virus protein VP39 119 296 IPR029063 -
Car16g00096 304 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 294 IPR029063 -
Car16g00096 304 PIRSF Nop17p 23 298 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4 303 - -
Car16g00096 304 MobiDBLite consensus disorder prediction 1 65 - -
Car16g00096 304 Pfam Fibrillarin 68 295 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PRINTS Fibrillarin signature 86 105 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PRINTS Fibrillarin signature 114 133 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PRINTS Fibrillarin signature 141 162 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PRINTS Fibrillarin signature 166 183 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PRINTS Fibrillarin signature 191 220 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PRINTS Fibrillarin signature 221 250 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 PRINTS Fibrillarin signature 273 294 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 SMART Fibrillarin_2 68 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 Gene3D Phosphorylase Kinase; domain 1 63 118 - -
Car16g00096 304 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 303 - -
Car16g00096 304 ProSitePatterns Fibrillarin signature. 166 180 IPR020813 GO:0003723|GO:0006364|GO:0008168
Car16g00096 304 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 82 295 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00096 K14563 NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] - csv:101206527 488.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00096 Car18g01171 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00096 Car-Chr16:591438 Car18g01171 Car-Chr18:11441970 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g735 . . Bda05g00085 . Bpe03g00144 . Bma10g01237 Bma14g02052 Cmo16g00115 Cmo18g01289 . . . . Sed07g1007 . Cpe14g00092 Bhi01g01269 Tan01g0216 Cmetu09g1022 . Hepe07g0136 Mch10g1473 . . . . . . . . . . . . Lsi05g01207 . . . Blo07g00395 Blo09g00074 . . . . . . . . . Cma16g00107 Cma18g01262 Car16g00096 Car18g01171 Cpe09g00075 . Bhi12g00810 . . . . . Lcy10g0884 Cla05g00901 Cam05g0985 Cec05g0991 Cco05g0989 Clacu05g0973 Cmu05g0930 Cre05g1015 . Csa03g01736 Chy06g00967 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002978 1 2 2 2 2 1 2 2 2 1 1 2 1 2 2 2 1 3 1 2 2 1 2 2 2 1 3 3 1 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00096 Car_Chr16 FPKM 33.028515 34.655418 0.0 0.0 1.437774 1.72914 1.242158 0.0 0.0 0.0