Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00107 ATGGCTTCCACTCCTCTTACGTGTTCACCGAGCTCTCTCCAGCTTCGGCTCGCTCTGAATAGCAAGAATTGCGGCAAATTCCCTTCAGTTCATGTTCGGGCGAGAGTGACGAAACTGGATCCTCGGCTCCGCGTGATCTCCCGCCCTATTGTTCATAATGGCGTGATAATCGAGAGAGAAAATGGACTGCGTCGCAGTGGAGTTTGTTTTGCTGAGTTGGAGTCGACTACTGATGGATTCTCTGGGTGGTCGGAATCTGATTCCGGGGAGGAGGCTTTGGACTTACGGAGAAAGAAGTGGTTTGGAGGGTTCGTGGGGATTGGAGTTACTGGATTCATCCTTGTCTCGGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATGGTTCCAGACAAAAGCCGCAAATGGAGGCCTTAAGTATGCAGCAAGAATTATTGTTGGATTCTGATACTGGACATGATAGCCTTGATGAAGATGAAAAAGAAGATAACATTGTGAATGCAGATGATGGAGCTCTCGCTGATAATTCAGGTGTTCCTGCTCCTTTGGTTTCTGCAGCTGTTAAAACACTTCCTGGCGAGGTCCTAGTTCCTGCAGCAGTGGATCAGGTTCAGGGGCAGGCATTGGCAGCACTACAAGGTTTAAAGGTGATAGAGGCTGACGTTGAACCTAGCGATCTATGTACTCGTCGTGAATATGCTCGTTGGTTGGTGTCTGCAAGCAGTGCTCTTTCAAGGAACACAACATCCAAAGTATACCAAGCAATGTATATACAGAATATTACTGAGCTTGCTTTTGATGATATTACACCAGAAGACCCTGATTTCGCATCTATTCAAGGTTTAGCAGAAGCGGGACTGATTTCAAGCAAGCTTTCGAGACACGATATTTCTTCGACGTTGGACGAAGACCAGGGTCCTTTTCATTTCTCTCCGGAAAGCCCTTTATCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTTGAAAAAAGACTGCTGCCAGAGGCAGACGGAAAGATGCTCCGCCAAGTTTCTGGATTTATTGATACTGATAAGATCCATCCAGATGCTTGTCCTGCACTTGTTGCTGATCTTTCTGCCGGAGAACAGGGAATAATAGCTCTTGCATTTGGATATACAAGGCTGTTCCAGCCGGATAAGCCAGTAACAAAGGCACAAGCTGCCATTGCTCTTGCAACAGGGGAGGCTTCTGATATGGTAAGCGAGGAGCTTGCAAGGATTGAAGCTGAATCAATGGCGGAAAATGCTGTTGCTGCACATAGTGCGTTGGTAGCTCAAGTTGAGAAAGATATTAATGGCAGCTTCGAGAAAGAACTTTCCATTGAAAGAGAAAAGGTTGAGGCTGTGGAGAAAATGGCAGAAGAGACAAAGCAAGAATTGGAAAGATTAAGATCCGAAAGAGAGAGAGATAATATCAGCTTGATGAGGGAACAAGCTGCTATTGAATCGGAAATGGAAGTTCTCTCAAAGTTAAGATATGAGTTGGAGGAGCAGTTGCAAGGCCTGATGAGTAACAAAGTAGAGGTTTCCCATGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAACCAGGAAATTTCCCGCTTGCAGTATGAGCTTGAAGTTGAGAGGAAGGCGTTGTCCATAGCCAGAGCTTGGGCAGAGGATGAAGCAAAAAGGGCAAGAGAACAAGCAAAAGCACTTGAAGAAGCTAGAGATAGCTGGGAAAGGCGTGGCATCAAAGTAATGGTGGACAGCGATCTCCGTGAACAGGAATCAGCTGGCGATACTTGGCTCGATTCTAGCGAACAGTTTGCAGTCGAAGAAACTGTGGAAAGGGCCGAGAACTTATTGGCCAAGCTGAAAGGAATGGCTAGAGAAGTAGGAGGGAAATGCAGGGACATAATTGAGAAGATCATCCAGAAGATGGCAATAGTAGTATCAAACTTGAGACAATGGATTTCGAATGCTGGAGAACAGGGTGAAGATCTAAAGAATGTGGCCATTTCAAGGGCAAGTAGATCAGCAACTGAGGTGCAACAGAGCATTGCAGAGTTGAGGTTGGCCGTGAAGGTGGGAGCTAAGCGAGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTACCCAAAAGTTTAGAACATAG 2160 45.79 MASTPLTCSPSSLQLRLALNSKNCGKFPSVHVRARVTKLDPRLRVISRPIVHNGVIIERENGLRRSGVCFAELESTTDGFSGWSESDSGEEALDLRRKKWFGGFVGIGVTGFILVSGITFAAWSINKQNGSRQKPQMEALSMQQELLLDSDTGHDSLDEDEKEDNIVNADDGALADNSGVPAPLVSAAVKTLPGEVLVPAAVDQVQGQALAALQGLKVIEADVEPSDLCTRREYARWLVSASSALSRNTTSKVYQAMYIQNITELAFDDITPEDPDFASIQGLAEAGLISSKLSRHDISSTLDEDQGPFHFSPESPLSRQDLVSWKMALEKRLLPEADGKMLRQVSGFIDTDKIHPDACPALVADLSAGEQGIIALAFGYTRLFQPDKPVTKAQAAIALATGEASDMVSEELARIEAESMAENAVAAHSALVAQVEKDINGSFEKELSIEREKVEAVEKMAEETKQELERLRSERERDNISLMREQAAIESEMEVLSKLRYELEEQLQGLMSNKVEVSHEKERINKLRKEAEIENQEISRLQYELEVERKALSIARAWAEDEAKRAREQAKALEEARDSWERRGIKVMVDSDLREQESAGDTWLDSSEQFAVEETVERAENLLAKLKGMAREVGGKCRDIIEKIIQKMAIVVSNLRQWISNAGEQGEDLKNVAISRASRSATEVQQSIAELRLAVKVGAKRVVGDCREGVEKITQKFRT 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 651982 656852 - Carg15129-RA Car16g00107 163259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00107 719 Coils Coil 612 632 - -
Car16g00107 719 Coils Coil 447 485 - -
Car16g00107 719 Coils Coil 514 544 - -
Car16g00107 719 Coils Coil 556 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00107 - - - csv:101215442 1143.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00107 Car18g01161 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01591 Car-Chr4:9213935 Car16g00107 Car-Chr16:651982 4.07E-19 transposed
Car04g01592 Car-Chr4:9215955 Car16g00107 Car-Chr16:651982 9.81E-28 transposed
Car18g01161 Car-Chr18:11386714 Car16g00107 Car-Chr16:651982 4.74E-07 transposed
Car16g00107 Car-Chr16:651982 Car18g01160 Car-Chr18:11385866 4.74E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g707 . . . . . . . Bma14g02074 . Cmo18g01276 . . . . . . Cpe14g00103 Bhi01g01302 Tan01g0237 . . . Mch10g0147 . . . . . . . . Cone1ag1163 Cone5ag0873 . . . . . Cme06g01012 . . . . . . . . . . . . . Car16g00107 Car18g01161 Cpe09g00084 . . . . . . . . Cla05g00890 . Cec05g0981 . . Cmu05g0921 . . Csa03g01723 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011727 2 3 1 1 1 0 3 0 1 0 0 0 1 1 1 1 1 2 1 0 1 1 1 1 1 0 0 1 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00107 Car_Chr16 FPKM 22.661018 25.106735 12.773676 14.941448 34.726406 33.830925 34.188396 28.465414 26.651388 29.203835