Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00109 ATGTTTCTAGCTCTAGTTCTTTGTTTTGACCATCGGAAGAGTAGGGATACAGTCAATCTCTTAGATATGCACGCAAGGGGCCACAAGTACATTTGGTATGCCCTGCCTGGTTATGCCATTGGGCTGGTGACCGCTCTAGCAGCTGGTGTTTTGACTCACTCGCCTCAACCTGCCCTATTGTATCTGGTGCCTTCTACATTAGGACCTGTTATTGCCATATCTTGGATAAGGAAGGATTTTTTGGAGTTATGGGAAGGGCCTTTGCCGAACCCCAATGATAAAGTACGTGAAGTAGAAGTAGTTTGA 306 45.75 MFLALVLCFDHRKSRDTVNLLDMHARGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVIAISWIRKDFLELWEGPLPNPNDKVREVEVV 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 666132 667819 - Carg15131-RA Car16g00109 163261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00109 101 Pfam Signal peptide peptidase 1 86 IPR007369 GO:0004190|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00109 K09598 SPPL3; signal peptide peptidase-like 3 [EC:3.4.23.-] - csv:101215917 197.593
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00109 Car18g01159 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00109 Car-Chr16:666132 Car17g00525 Car-Chr17:4854084 3.29E-08 dispersed
Car16g00109 Car-Chr16:666132 Car18g01159 Car-Chr18:11384096 5.39E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010879 1 2 1 1 1 0 2 0 1 1 1 0 0 1 1 1 0 2 2 0 1 1 2 1 1 0 1 2 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00109 Car_Chr16 FPKM 1.547838 1.477885 2.618989 2.885098 2.463537 2.091075 2.32875 4.923416 5.221993 5.503103