Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00113 ATGGTGAGCCAAAGGCAAAGACTTGCCCGGAAAAAGTACAGAGAAGAACACCCGGAACTGTTTCCGGAAGTAGAGCCAACGCCACCTAAAGACCCCGACAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAGAAGGCAGAATCGAACTCAACCAGAGACCCAAATAAACCGCACAAGAAGGGATTTAAGAAACACCCTCTTAGAGTGCCTGGGATGAAACCCGGAGAAAGCTGCTTCATCTGCAAGGCCAAAGACCACATTGCTAAGCTTTGCCCCGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGTCGGAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAAGGACTGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCACTGGCTAATTGTCCGCAGCCTCTTCAAGATGGAGGAACCAAATTCGCCAGTTGTTTTATTTGTAATGAAAGTGGACACTTAAGCAAAAACTGTCCGAAGAACACTCATGGGATCTACCCTAAGGGGGGAGGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGCCACCCAATTTTCTGCTGGGGCTTATGATGCATCTGGATATGTGGAAATGCGTAGACGACCAGAGACGAGGCGCGTGAGCGGTGATGATCTCGAGGATGATTTCAACATCGATGAAGATCATTTGCAGATGAAAGATGCAAAAGTGGAAAAGAAAAAGGGTCCCAAAGCGAACGCTGCATCTGGAATGGCTGTGAGTGATGACTGTAAGCTCAAATTTTTGGAATTGAAAACGAAGAGGAACTATCGATTCATTGTATTCAAGATTGAGAATCAAGAAGTTGTTGTGGATAAGCTCGGGAGTCCTCAAAAAACTTATGATGATTTCCTTGCTGCCATTCCTTCTGATGAGTGTCGTTATGCTGTCTTTGACTTTGATTTCACCACTAACGAGAACTGCCAGAAAAGCAAGATTTTCTTCATAGCTTGGTCCCCCGACACATCGATAGTGAGAAATAAGATGGTTTATGCGAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAACTGCAAGCCACAGATCCCAGCGAAATGAGCTTCGACATTATCAAAGCTCGAGCCTTTTAA 1176 44.56 MVSQRQRLARKKYREEHPELFPEVEPTPPKDPDKKKKKSKFKRKKAESNSTRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGGCKTCGEVTHLAKDCPNKATQFSAGAYDASGYVEMRRRPETRRVSGDDLEDDFNIDEDHLQMKDAKVEKKKGPKANAASGMAVSDDCKLKFLELKTKRNYRFIVFKIENQEVVVDKLGSPQKTYDDFLAAIPSDECRYAVFDFDFTTNENCQKSKIFFIAWSPDTSIVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 678420 682075 + Carg15135-RA Car16g00113 163265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00113 391 Pfam Zinc knuckle 101 117 IPR025836 -
Car16g00113 391 Pfam Cofilin/tropomyosin-type actin-binding protein 268 388 IPR002108 GO:0003779
Car16g00113 391 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Car16g00113 391 MobiDBLite consensus disorder prediction 8 34 - -
Car16g00113 391 MobiDBLite consensus disorder prediction 1 67 - -
Car16g00113 391 ProSiteProfiles Zinc finger CCHC-type profile. 156 171 IPR001878 GO:0003676|GO:0008270
Car16g00113 391 ProSiteProfiles Zinc finger CCHC-type profile. 183 198 IPR001878 GO:0003676|GO:0008270
Car16g00113 391 ProSiteProfiles ADF-H domain profile. 261 391 IPR002108 GO:0003779
Car16g00113 391 Pfam Zinc knuckle 128 144 IPR001878 GO:0003676|GO:0008270
Car16g00113 391 Pfam Zinc knuckle 156 171 IPR001878 GO:0003676|GO:0008270
Car16g00113 391 Pfam Zinc knuckle 182 198 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00113 - - - cpep:111810346 742.651
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car16g00113 Car18g01155 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00319 Car-Chr10:1570977 Car16g00113 Car-Chr16:678420 6.96E-10 dispersed
Car16g00113 Car-Chr16:678420 Car03g00385 Car-Chr3:4618281 2.01E-72 dispersed
Car16g01167 Car-Chr16:9932938 Car16g00113 Car-Chr16:678420 2.57E-10 dispersed
Car18g01155 Car-Chr18:11357416 Car16g00113 Car-Chr16:678420 1.79E-99 transposed
Car14g01837 Car-Chr14:14284348 Car16g00113 Car-Chr16:678420 1.93E-73 wgd
Car15g01009 Car-Chr15:7888705 Car16g00113 Car-Chr16:678420 2.37E-75 wgd
Car16g00113 Car-Chr16:678420 Car18g01154 Car-Chr18:11355989 5.53E-87 wgd
Car16g00113 Car-Chr16:678420 Car02g00811 Car-Chr2:5883479 2.46E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00113 Car_Chr16 FPKM 6.947791 7.256392 18.60392 17.911551 5.650848 5.419444 5.639525 0.369194 0.737996 0.656739