Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00121 ATGGAGTTGACACGCTTCCTTCTCATTTTCATCGTCTACTTCGAGCTCTGCATTTTGAGCTCCAATGGTATTATAGACCAGAATGAGATTATTATCGACAGAGAAAGCTTGATTTCTTTCAAAGCTTCGCTAGAAACCTCCGAAATTCTGCCATGGAACTCATCACATCCTCACTGCTTTTGGACTGGAGTTTCTTGCCGGCTCGGTCGAGTTACAGAGCTCTCTCTTTCATCTCTTTCGCTCAAAGGCCGACTCTCTCAGTCGCTTTTCAACATTTCGAGTCTCTCTGTTCTTGACCTTTCAAACAACTTTCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGGCGATAATCAGTTTTCCGGTGATTTCCCAATCGAGCTCACCGAGTTGTCTCAGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGATTGGAAATTTGAAGCTGCTACGGACCCTTGACCTCTCCAGCAATGCCTTCGTCGGAAATGTCCCGCCCCACATCGGAAACCTGACGGGGATTCTATCATTGGACCTCGGTAACAATCTTTTATCAGGTTCACTCCCATTGACTATCTTTACTGACCTTAAATCTTTAACGTCTCTGGACATTTCAAACAATTCGTTTTCGGGTTCAATCCCACCTGAAATTGGAAACCTACAGCATTTGACTGATCTTTATATCGGCATTAACCACTTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCTTCTTGTTCTTTAACTGGTCCATTACCTGACGAACTATCCAAGTTGAAATCATTGAGCAAACTGGACCTTTCATACAACCCACTTGGGTGTTCTATCCCGAAATCGATTGGTGAGTTACAGAACTTGACTATATTGAATCTGGTTTACACTCAGCTTAATGGTTCTATTCCTGCTGAGCTCGGGAGGTGCAGAAATTTGAAAACATTGATGCTTTCATTCAACTTTCTATCTGGGGTGTTGCCACAAGAGCTTTCAGAGCTTCCCATGTTGACATTTTCTGCTGAGAAGAATCAGCTTTCTGGGCCATTACCTTCCTGGCTTGGCAAATGGGATCATGTTGATTCTATTTTACTCTCGAGTAATCATCTCATGGGGGAAATCCCTCCTGAGATTGGAAATTGCTCGATGCTTAATCACCTGAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGACAGCAATTTCCTGTCGGGTACGATTGATGATACATTTGTGCTGTGTAGAAACCTTACGCAGCTGGTTTTGGTAGACAATCAGATTGTTGGGGCAATACCAGAGTACTTCTCAAACCTTTCCTTAATGGTAATCAACCTTGACTCTAATAATTTTACCGGTTGTTTACCTAGAAATATATGGAACTCAGTGGATTTAATGGAGTTTTCTGCCGCAAATAACCTGTTGGAGGGTCATCTCCCTTCAGAAATTGGCTATGCAGCTTCACTTGAGAGGCTTGTTCTCAGCAGCAATAGGTTGACAGGCGTTATACCAGATGAGATTGGAAATCTCACAGCTCTTTCAGTTCTAAATTTGAATTCCAATCTGCTTGAAGGAACTATTCCTACCATGCTTGCAGATTGCACTTCACTTACCACGTTGGACCTTGGAAACAATAGTCTAAAAGGGTCGATTCCTGAAAGACTGGCTAACCTTACTGAATTACAGTGTCTAGTTCTGTCACACAACATGTTATCTGGAGCCATACCTTCCAAGCCCTCTGCTTATTTTCGACAGGTTACTATTCCTGATTTGAGCTTTGTTCAGCATCACGGTGTTTTCGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGACGAACTGGGGAATTGTGTTGTTGTAGTTGATCTTTTGCTGAATAATAATCTACTTTCTGGAGAGATTCCTAGATCTCTCTCTCAGTTAACGAACCTGACAACCTTGGATTTGTCTAGCAATATGCTTACTGGTCCTATTCCCACAGAGATCGGCAATGCTCTCAAGCTCCAAGGCCTGTATCTATGGAATAATCACCTGGTGGGTACAATCCCCGAAAGCTTCAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTGACTGGAAATAAATTATCTGGTTCAATTCCAAGAACTCTTGGTGATCTGAAAGCTCTAACTCATTTGGATTTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAACATGTTGAATCTTGTCGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGACATGGAAGATCGAAACTTTGAATTTGGGTAATAACTATTTTGAGGGTGTCCTTCCACGAACATTGGGCAACCTTTCATACTTGACAACGTTGGATCTTCATGGAAATAAGTTCACAGGGCAAATCCCTTCAGATTTTGGGGATCTTATGCAACTTGAATACTTAGATGTTTCAAATAACAAGCTCTCAGGAGAAATTCCAGAGAAAATATGCAGCCTTGTCAATATGGTTTACCTGAATATGGCAGACAACAGTCTGGAAGGGCCAATTCCGAGCAGTGGCATTTGCCAGAATCTATCCAGAAGTTCACTTGTGGGTAACAAGGGCCTTTGTGGAAGAATCATGGGTTTGAATTGCGGGATCAAAATCTTGGAGAGATCAGCAGCATTGAATGCTTGGAGCGTTGCTGGGATCATCATTGTCAGTGTTCTTATCGTTCTAACTATCACATTCGCCATGCGGAGATGGATCATTCGAAGCCAGAGAGACAACGATCCAGAGGAAATGGAGGAAAGCAAATTAAAATGTTTCATAGACCCCAATCTCTATTTCTTAAGCAGCAGCAGCAGATCGAGAGAGCCTTTAAGCATCAATGTAGCCACGTTCGAGCAACCCCTTCTGAAATTGACTTTGGCTGATATTCTCGAAGCAACCAATAACTTCTGTAAAACAAACATCATTGGAGATGGAGGATTCGGGACAGTGTACAAGGCCACATTACCTGATGGAAAAATTGTTGCCGTGAAGAAACTAAGCGAAGCAAAAACACAGGGCCACAGAGAATTTATAGCTGAAATGGAAACCATAGGCAAAGTGAAGCACAATAATCTTGTACCACTACTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTCCTAGTCTATGAATATATGGTGAATGGTAGCTTGGATCTTTGGCTAAGAAACCGAATCGGTACCCTCGAAGTCCTTAACTGGGAGACTCGATTTAAAGTCGCTTCAGGCGCAGCTCGTGGATTGGCGTTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTCGAACCAAAAGTTGCCGACTTCGGGTTGGCTAGACTGATCAGTGCTTGTGAGACTCATGTCACAACTGAGATTGCTGGAACTTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGAGGTCTACTACAAAGGGGGACGTTTATAGCTATGGTGTAATCCTACTGGAATTGGTAACTGGGAAGGAACCAACAGGGCCCGACTTTAAAGAGATTGAGGGCGGAAACCTGGTTGGTTGGGTGTTTCAGAAGATCAACAAGGGGCAGGCTGCAGACGTTCTTGACGCCACAGTACTGAATGGTGATTCCAAGCATATGATGCTTCAAACCCTTCAGATTGCTTGTGTTTGCTTATCAGAAAATCCTGCTAACAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGTGTAA 3900 43.08 MELTRFLLIFIVYFELCILSSNGIIDQNEIIIDRESLISFKASLETSEILPWNSSHPHCFWTGVSCRLGRVTELSLSSLSLKGRLSQSLFNISSLSVLDLSNNFLYGSIPPQISNLRSLKVLALGDNQFSGDFPIELTELSQLENLKLGTNLFTGKIPPEIGNLKLLRTLDLSSNAFVGNVPPHIGNLTGILSLDLGNNLLSGSLPLTIFTDLKSLTSLDISNNSFSGSIPPEIGNLQHLTDLYIGINHFSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKSIGELQNLTILNLVYTQLNGSIPAELGRCRNLKTLMLSFNFLSGVLPQELSELPMLTFSAEKNQLSGPLPSWLGKWDHVDSILLSSNHLMGEIPPEIGNCSMLNHLSLSNNLLTGPIPKEICNAASLMEIDLDSNFLSGTIDDTFVLCRNLTQLVLVDNQIVGAIPEYFSNLSLMVINLDSNNFTGCLPRNIWNSVDLMEFSAANNLLEGHLPSEIGYAASLERLVLSSNRLTGVIPDEIGNLTALSVLNLNSNLLEGTIPTMLADCTSLTTLDLGNNSLKGSIPERLANLTELQCLVLSHNMLSGAIPSKPSAYFRQVTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGEIPRSLSQLTNLTTLDLSSNMLTGPIPTEIGNALKLQGLYLWNNHLVGTIPESFSHLSSLVKLNLTGNKLSGSIPRTLGDLKALTHLDLSSNELDGDLPSSLSNMLNLVGLYVQENRLSGQVVELFPSSMTWKIETLNLGNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGQIPSDFGDLMQLEYLDVSNNKLSGEIPEKICSLVNMVYLNMADNSLEGPIPSSGICQNLSRSSLVGNKGLCGRIMGLNCGIKILERSAALNAWSVAGIIIVSVLIVLTITFAMRRWIIRSQRDNDPEEMEESKLKCFIDPNLYFLSSSSRSREPLSINVATFEQPLLKLTLADILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSEAKTQGHREFIAEMETIGKVKHNNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRIGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSYGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNGDSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDV 1299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 709313 713212 - Carg15143-RA Car16g00121 163273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00121 1299 ProSitePatterns Protein kinases ATP-binding region signature. 1027 1050 IPR017441 GO:0005524
Car16g00121 1299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1143 1155 IPR008271 GO:0004672|GO:0006468
Car16g00121 1299 Pfam Leucine rich repeat N-terminal domain 33 66 IPR013210 -
Car16g00121 1299 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Car16g00121 1299 Pfam Leucine Rich Repeat 288 309 IPR001611 GO:0005515
Car16g00121 1299 Pfam Leucine rich repeat 706 764 IPR001611 GO:0005515
Car16g00121 1299 Pfam Leucine rich repeat 804 862 IPR001611 GO:0005515
Car16g00121 1299 Pfam Leucine rich repeat 525 584 IPR001611 GO:0005515
Car16g00121 1299 ProSiteProfiles Leucine-rich repeat profile. 573 596 IPR001611 GO:0005515
Car16g00121 1299 Pfam Protein kinase domain 1024 1291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car16g00121 1299 ProSiteProfiles Protein kinase domain profile. 1021 1299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02087 Car-Chr4:17006651 Car16g00121 Car-Chr16:709313 5.15E-13 dispersed
Car04g02364 Car-Chr4:18989015 Car16g00121 Car-Chr16:709313 1.51E-76 dispersed
Car10g00433 Car-Chr10:2160902 Car16g00121 Car-Chr16:709313 1.78E-09 dispersed
Car15g00542 Car-Chr15:2962291 Car16g00121 Car-Chr16:709313 2.89E-75 dispersed
Car15g00825 Car-Chr15:4698262 Car16g00121 Car-Chr16:709313 1.68E-57 dispersed
Car16g00121 Car-Chr16:709313 Car13g00678 Car-Chr13:8208224 0 dispersed
Car17g00437 Car-Chr17:2931463 Car16g00121 Car-Chr16:709313 3.11E-06 dispersed
Car18g01077 Car-Chr18:10930947 Car16g00121 Car-Chr16:709313 3.86E-11 dispersed
Car04g00919 Car-Chr4:5257114 Car16g00121 Car-Chr16:709313 7.64E-26 transposed
Car08g00483 Car-Chr8:3074434 Car16g00121 Car-Chr16:709313 4.80E-14 transposed
Car16g00368 Car-Chr16:2277473 Car16g00121 Car-Chr16:709313 7.43E-10 transposed
Car16g00121 Car-Chr16:709313 Car18g01139 Car-Chr18:11318917 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89422 PF00069 Pkinase 2.10E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00121 - - csv:101215443 2247.63