Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00132 ATGGAATCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGCTCCGAGAGTAGTACTTGCCGGCGGACCATATTTTCCGAGAAGGAGCTTATGTTAGCGGCGAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCACCCTGTTTACAGAGGGGTCAGGAGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCTAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCTGCCATGAAGCTTCGAGGTCGCTCTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCGGAGCCAGCATCTGCTGACGCCAGGGATATTCAGAAGGCGGCGGCGGAGGCGGCGGAGGCATTCCGGCCGGCCGAATCAGATGGGTCTTCTGTTGATGACTCAAGGACGGAAAATATGATGACGGCGGAGACGACGCCAGAAAACGTGTTGTACGTGGATGATGATGCAATTTTTGGGCTGCCGGGATTGTTGGAGGATATGGCTGCAGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCCGACGTGTCATTATGGAGCTACTAA 636 53.3 MESFSTFYEDYFSSSESSTCRRTIFSEKELMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAMKLRGRSACLNFADSAWRLPEPASADARDIQKAAAEAAEAFRPAESDGSSVDDSRTENMMTAETTPENVLYVDDDAIFGLPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 761641 762276 + Carg16703-RA Car16g00132 163284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00132 211 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Car16g00132 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Car16g00132 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Car16g00132 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Car16g00132 211 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Car16g00132 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Car16g00132 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 13 211 - -
Car16g00132 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Car16g00132 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Car16g00132 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 211 IPR045277 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00257 Car-Chr14:1207041 Car16g00132 Car-Chr16:761641 1.90E-44 dispersed
Car14g00258 Car-Chr14:1211184 Car16g00132 Car-Chr16:761641 3.26E-38 dispersed
Car16g00132 Car-Chr16:761641 Car12g00237 Car-Chr12:1595860 9.13E-37 dispersed
Car15g01085 Car-Chr15:8516066 Car16g00132 Car-Chr16:761641 2.22E-34 wgd
Car16g00132 Car-Chr16:761641 Car02g01243 Car-Chr2:8409741 2.10E-38 wgd
Car16g00132 Car-Chr16:761641 Car02g00790 Car-Chr2:5751435 3.22E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4899 PF00847 AP2 5.30E-16 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00132 - K09286 csv:101220749 343.969