Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00144 ATGGCTCACACTCCTCTGAAATGGCTGTGTTTGCTGCTGGTTTTTGACTGTTTGCTTCATTCAAGCGCTCAGTTTATGAAAACTTATGTTGTTCAAATGGATAGGTCTGCAATGCCGGACTCATTTTCGGATCATCTTCAGTGGTACTCCACAGTGCTTACCAGTGTGGTCGTTAATCCTGAGAGAGAAGGCAATGGGGGAGGTGAACAGAGGATCATTTACAGTTACCAGAATGTTTTCCATGGAGTTGCAGCTCGATTGAGTGAAGATGAGGCAGAGCGGCTCGAGGAAGAAGATGGGGTCTTGGCCATTTTTCCAGAGACCAAGTACGAGCTTCACACCACCAGAAGCCCCAGATTTCTTGGGCTTGAACCAGCTGACAGCAATAGCGCCTGGTCTCAGCAAATTGCAGACCATGACGTGGTTGTTGGAGTTTTGGACACTGGGATTTGGCCGGAGAGTGAGAGCTTCAACGATGCTGGGATGTCGCCGGTGCCGGCGCATTGGAAAGGGGAATGCGAAACAGGGCGAGACTTCACGAAACAGAATTGTAACAGAAAGATCGTTGGAGCTAAAATGTTCTACCATGGGTATGAAGCTGCAACTGGGAAATTTAACGAAAAGTTGGAGTATAAATCTCCAAGGGATCAAGATGGGCATGGAACTCACACGGCAGCCACCGTCGCCGGCTCTCCGACAGCCGGCGCGAACCTCCTCGGTTATGCGTATGGGACGGCCAGAGGAATGGCGCCCGGTGCTAGAATAGCGGCTTACAAAGTCTGTTGGGCCGGCGGCTGTTTTAGCTCCGACATTTTGTCGGCTGTCGACAGAGCTGTGGCCGATGGAGTAAATGTTCTGTCCATCTCTTTGGGAGGTGGGGTCTCTTCTTACTATCGCGATAGCCTCTCCGTTGCAGCATTTGGTGCAATGGAGATGGGCGTGTTTGTGTCCTGTTCGGCCGGAAATGCAGGGCCGGACCCTGTCAGTCTCACAAACGTATCGCCATGGATAACCACTGTCGGTGCCAGCACAATGGACAGAGATTTCCCGGCCATTGTCAAGCTCGGCAATGGCAGAACAGTCACCGGCGTTTCACTTTACAAAGGAAGAACCACAATCCCAGAAAACAAACAATTCCCAGTTGTATACATGGGGAGTAACTCGAGCAACCCGGATCCGAGCTCGCTGTGTTTAGAAGGAACATTAGATCCCCATTTCGTGGCCGGAAAAATCGTGATATGCGATCGTGGAATTAGCCCACGGGTCCAGAAGGGTGTGGTGGTGAAGAATGCAGGTGGGGTTGGGATGATTCTGGCGAACACGGCGGCGAATGGGGAAGAACTTGTTGCCGATTGCCATTTGGTACCTGCCGTCGCCGTCGGTGAAAGAGAAGGTAAAGCAATTAAGGTGTACGCATTGACGAATCGAAAACCGACGGCGACTTTAGGATTTTTAGGGACAAGATTGGGGGTAAGACCGTCGCCGGTGGTGGCGGCGTTTTCATCCAGAGGACCAAATTTCCTCACACTAGAGATCCTCAAGCCCGATCTAGTGGCCCCTGGCGTTAACATCCTCGCCGCTTGGACAGGAAAAACAGGGCCGTCGAGTTTGACGACGGATACAAGAAGGGTTAAATTCAACATTCTGTCAGGAACCTCAATGTCTTGCCCACACGTCAGTGGCGTAGCAGCTCTGATCAAATCAAAGCATCCCGATTGGAGCCCGTCGGCAATCAAATCGGCACTGATGACCACCGCTTACGTCCACGACAACACCTATAAGCCTCTCAAAGACTCCTCCGGCGCATCGCCGTCAAGTCCGTACGACCACGGCGCCGGCCACATAAACCCTAGAAAAGCCCTCGATCCTGGGTTGGTTTACGAAATTCAGCCGCAAGATTACTTCGAATTCCTCTGTACGCAGGATTTAACCCCTTCACAGCTCAAAGTATTCTCCAAATACTCAAACAGATCTTGTCATCACCTCCTCCCCAACCCTGGAGACTTAAATTATCCGGCCATCTCTGCCGTTTTCCCCGAAAAAACCTCCGTCACTTCCTTGACCCTTCACAGAACCGTCACCAACGTCGGCCCTGCAACCTCCAGTTACCATGCCGTGGTGACTCCGTTCAACGGCGCCGCCGTGAAAGTTGAGCCGGAGAGTCTGAACTTCACAAGGAGATATCAGAAGCTTTCATACAAAATCACTTTCCTGACGAAGAAGAGACAGAGTATGCCGGAATTCGGAGGACTAATCTGGAAGGATGGAACTCATAGTGTGAGAATCACTTTCGCCGTCACCGTCACCGTCACCGTCACGTCCCCAAATACCAATACCGCCTCTTTAACTGGCCCTCTACATTAA 2364 51.4 MAHTPLKWLCLLLVFDCLLHSSAQFMKTYVVQMDRSAMPDSFSDHLQWYSTVLTSVVVNPEREGNGGGEQRIIYSYQNVFHGVAARLSEDEAERLEEEDGVLAIFPETKYELHTTRSPRFLGLEPADSNSAWSQQIADHDVVVGVLDTGIWPESESFNDAGMSPVPAHWKGECETGRDFTKQNCNRKIVGAKMFYHGYEAATGKFNEKLEYKSPRDQDGHGTHTAATVAGSPTAGANLLGYAYGTARGMAPGARIAAYKVCWAGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYYRDSLSVAAFGAMEMGVFVSCSAGNAGPDPVSLTNVSPWITTVGASTMDRDFPAIVKLGNGRTVTGVSLYKGRTTIPENKQFPVVYMGSNSSNPDPSSLCLEGTLDPHFVAGKIVICDRGISPRVQKGVVVKNAGGVGMILANTAANGEELVADCHLVPAVAVGEREGKAIKVYALTNRKPTATLGFLGTRLGVRPSPVVAAFSSRGPNFLTLEILKPDLVAPGVNILAAWTGKTGPSSLTTDTRRVKFNILSGTSMSCPHVSGVAALIKSKHPDWSPSAIKSALMTTAYVHDNTYKPLKDSSGASPSSPYDHGAGHINPRKALDPGLVYEIQPQDYFEFLCTQDLTPSQLKVFSKYSNRSCHHLLPNPGDLNYPAISAVFPEKTSVTSLTLHRTVTNVGPATSSYHAVVTPFNGAAVKVEPESLNFTRRYQKLSYKITFLTKKRQSMPEFGGLIWKDGTHSVRITFAVTVTVTVTSPNTNTASLTGPLH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 827976 830711 - Carg16715-RA Car16g00144 163296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00144 787 ProSitePatterns Serine proteases, subtilase family, serine active site. 551 561 IPR023828 -
Car16g00144 787 Pfam Subtilase family 139 592 IPR000209 GO:0006508|GO:0008236
Car16g00144 787 Pfam Peptidase inhibitor I9 28 113 IPR010259 -
Car16g00144 787 Pfam PA domain 380 468 IPR003137 -
Car16g00144 787 Pfam Fibronectin type-III domain 668 766 IPR041469 -
Car16g00144 787 ProSiteProfiles Serine proteases, subtilase domain profile. 109 621 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00144 - - - csv:101214825 1380.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00692 Car-Chr10:3589429 Car16g00144 Car-Chr16:827976 0 dispersed
Car16g00144 Car-Chr16:827976 Car20g00658 Car-Chr20:3717241 0 dispersed
Car16g00144 Car-Chr16:827976 Car18g01109 Car-Chr18:11090735 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g533 . . . . Bpe03g00102 . . Bma14g02104 Cmo16g00173 Cmo18g01221 . . . . . . Cpe14g00140 Bhi01g01399 . . . Hepe07g0211 Mch10g0213 . . . . . . . . Cone1ag1115 Cone5ag0823 . . Lsi05g01289 . . Cme06g00938 Blo07g00459 Blo09g00124 . . . . . . . . . . . Car16g00144 . Cpe09g00128 . . . . . . . . Cla05g00825 Cam05g0909 Cec05g0912 Cco05g0916 Clacu05g0898 Cmu05g0855 Cre05g0942 . Csa03g01651 Chy06g00888 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g01468 . 30 769 Subtilisin-like Serine Gene Family AT1G04110 67.1 2.5e-304 1041.6
Car19g00095 . 7 726 Subtilisin-like Serine Gene Family AT1G04110 66.4 3.0e-289 991.5
Car09g00079 . 11 509 Subtilisin-like Serine Gene Family AT1G20160 60.4 7.1e-168 587.8
Car03g01332 CCT,CST 9 838 Subtilisin-like Serine Gene Family AT1G30600 64.7 9.7e-310 1059.7
Car07g00037 CCT,CST 9 836 Subtilisin-like Serine Gene Family AT1G30600 63.9 6.1e-304 1040.4
Car16g00018 . 64 773 Subtilisin-like Serine Gene Family AT1G32940 54.1 1.2e-218 756.9
Car16g00018 . 64 773 Subtilisin-like Serine Gene Family AT1G32950 54.8 2.9e-217 752.3
Car16g00018 . 8 773 Subtilisin-like Serine Gene Family AT1G32960 54.6 1.9e-235 812.8
Car18g00527 CCT 47 715 Subtilisin-like Serine Gene Family AT1G62340 52.4 5.6e-209 724.9
Car10g00692 . 26 765 Subtilisin-like Serine Gene Family AT2G05920 73.3 0.0e+00 1090.5
Car03g00848 . 27 763 Subtilisin-like Serine Gene Family AT2G05920 55.3 2.1e-231 799.3
Car05g00130 . 36 772 Subtilisin-like Serine Gene Family AT2G05920 55.7 5.8e-221 764.6
Car16g00144 . 19 765 Subtilisin-like Serine Gene Family AT2G05920 51.7 6.9e-214 741.1
Car18g01109 CST 27 765 Subtilisin-like Serine Gene Family AT2G05920 51.6 5.8e-213 738.0
Car20g00658 . 29 763 Subtilisin-like Serine Gene Family AT2G05920 51.0 2.8e-207 719.2
Car07g00646 . 33 766 Subtilisin-like Serine Gene Family AT2G05920 50.6 3.8e-204 708.8
Car11g00612 . 97 564 Subtilisin-like Serine Gene Family AT2G05920 73.3 4.2e-203 705.3
Car17g00619 . 25 778 Subtilisin-like Serine Gene Family AT2G05920 50.7 1.9e-200 696.4
Car08g00711 . 28 778 Subtilisin-like Serine Gene Family AT2G05920 50.6 1.6e-199 693.3
Car05g00664 CST 14 816 Subtilisin-like Serine Gene Family AT2G19170 82.2 0.0e+00 1347.4
Car12g00864 CST 15 501 Subtilisin-like Serine Gene Family AT2G19170 82.8 5.1e-239 824.7
Car10g00692 . 4 763 Subtilisin-like Serine Gene Family AT3G14067 53.5 1.6e-221 766.5
Car03g00848 . 9 763 Subtilisin-like Serine Gene Family AT3G14067 53.0 1.7e-220 763.1
Car05g00130 . 22 772 Subtilisin-like Serine Gene Family AT3G14067 51.8 3.1e-209 725.7
Car11g00612 . 96 562 Subtilisin-like Serine Gene Family AT3G14067 53.0 8.6e-135 478.4
Car08g00711 . 31 786 Subtilisin-like Serine Gene Family AT3G14240 76.0 0.0e+00 1190.6
Car17g00619 . 28 786 Subtilisin-like Serine Gene Family AT3G14240 76.0 0.0e+00 1186.4
Car20g00658 . 31 771 Subtilisin-like Serine Gene Family AT3G14240 58.8 3.5e-245 845.1
Car07g00646 . 34 774 Subtilisin-like Serine Gene Family AT3G14240 57.6 3.6e-242 835.1
Car03g00848 . 29 759 Subtilisin-like Serine Gene Family AT3G14240 52.0 8.4e-215 744.2
Car16g00144 . 28 767 Subtilisin-like Serine Gene Family AT3G14240 50.4 2.5e-211 732.6
Car10g00692 . 29 759 Subtilisin-like Serine Gene Family AT3G14240 51.7 4.0e-209 725.3
Car11g00612 . 97 561 Subtilisin-like Serine Gene Family AT3G14240 51.4 5.7e-131 465.7
Car04g00933 . 9 567 Subtilisin-like Serine Gene Family AT4G00230 60.4 4.1e-193 671.8
Car07g00850 . 1 538 Subtilisin-like Serine Gene Family AT4G00230 50.7 5.4e-145 511.9
Car06g00403 . 26 556 Subtilisin-like Serine Gene Family AT4G00230 50.5 5.7e-139 491.9
Car04g00049 . 2 442 Subtilisin-like Serine Gene Family AT4G00230 54.6 6.2e-133 471.9
Car16g00018 . 64 773 Subtilisin-like Serine Gene Family AT4G10510 53.9 5.2e-219 758.1
Car16g00018 . 35 773 Subtilisin-like Serine Gene Family AT4G10520 57.0 2.1e-234 809.3
Car16g00018 . 35 773 Subtilisin-like Serine Gene Family AT4G10530 55.3 6.2e-223 771.2
Car16g00018 . 8 773 Subtilisin-like Serine Gene Family AT4G10540 53.4 1.3e-231 800.0
Car16g00018 . 64 773 Subtilisin-like Serine Gene Family AT4G10550 54.1 8.6e-222 767.3
Car03g01332 CCT,CST 15 838 Subtilisin-like Serine Gene Family AT4G20430 69.2 0.0e+00 1142.5
Car07g00037 CCT,CST 12 836 Subtilisin-like Serine Gene Family AT4G20430 67.9 0.0e+00 1118.6
Car18g00308 . 1 283 Subtilisin-like Serine Gene Family AT4G21320 76.4 3.1e-130 461.8
Car16g00018 . 39 773 Subtilisin-like Serine Gene Family AT4G21630 53.9 2.6e-213 739.2
Car16g00018 . 37 773 Subtilisin-like Serine Gene Family AT4G21640 52.1 6.9e-203 704.5
Car16g00018 . 23 773 Subtilisin-like Serine Gene Family AT4G21650 52.1 1.4e-214 743.4
Car02g00624 . 56 782 Subtilisin-like Serine Gene Family AT4G26330 57.6 4.8e-236 814.7
Car05g00664 CST 3 816 Subtilisin-like Serine Gene Family AT4G30020 80.9 0.0e+00 1338.9
Car12g00864 CST 9 501 Subtilisin-like Serine Gene Family AT4G30020 81.8 5.7e-238 821.2
Car20g00658 . 24 771 Subtilisin-like Serine Gene Family AT4G34980 75.7 0.0e+00 1154.8
Car07g00646 . 33 774 Subtilisin-like Serine Gene Family AT4G34980 74.1 0.0e+00 1132.9
Car17g00619 . 1 786 Subtilisin-like Serine Gene Family AT4G34980 53.4 9.1e-230 793.9
Car08g00711 . 22 786 Subtilisin-like Serine Gene Family AT4G34980 53.6 1.2e-229 793.5
Car03g00848 . 13 759 Subtilisin-like Serine Gene Family AT4G34980 51.3 6.1e-210 728.0
Car10g00692 . 8 759 Subtilisin-like Serine Gene Family AT4G34980 50.9 1.5e-208 723.4
Car16g00144 . 9 767 Subtilisin-like Serine Gene Family AT4G34980 50.3 7.5e-208 721.1
Car11g00612 . 97 561 Subtilisin-like Serine Gene Family AT4G34980 50.6 3.4e-128 456.4
Car07g00850 . 1 527 Subtilisin-like Serine Gene Family AT5G03620 58.8 1.7e-175 613.2
Car06g00403 . 12 550 Subtilisin-like Serine Gene Family AT5G03620 56.1 5.9e-173 604.7
Car10g00574 . 291 1046 Subtilisin-like Serine Gene Family AT5G19660 79.3 0.0e+00 1258.8
Car03g01332 CCT,CST 34 612 Subtilisin-like Serine Gene Family AT5G44530 70.5 4.0e-244 841.3
Car07g00037 CCT,CST 34 612 Subtilisin-like Serine Gene Family AT5G44530 68.7 6.7e-239 823.9
Car16g00144 . 27 767 Subtilisin-like Serine Gene Family AT5G51750 73.6 0.0e+00 1142.9
Car18g01109 CST 27 763 Subtilisin-like Serine Gene Family AT5G51750 74.0 0.0e+00 1140.2
Car03g00848 . 18 763 Subtilisin-like Serine Gene Family AT5G51750 52.8 6.4e-231 797.7
Car05g00130 . 14 772 Subtilisin-like Serine Gene Family AT5G51750 52.0 1.4e-222 770.0
Car10g00692 . 24 763 Subtilisin-like Serine Gene Family AT5G51750 51.8 7.9e-221 764.2
Car11g00612 . 97 562 Subtilisin-like Serine Gene Family AT5G51750 52.4 2.7e-136 483.4
Car04g01067 . 42 711 Subtilisin-like Serine Gene Family AT5G59190 50.6 3.7e-182 635.6
Car03g00848 . 8 764 Subtilisin-like Serine Gene Family AT5G67360 71.4 0.0e+00 1093.6
Car05g00130 . 30 773 Subtilisin-like Serine Gene Family AT5G67360 65.0 5.9e-282 967.2
Car10g00692 . 29 764 Subtilisin-like Serine Gene Family AT5G67360 56.7 4.3e-232 801.6
Car16g00144 . 17 767 Subtilisin-like Serine Gene Family AT5G67360 53.9 2.1e-226 782.7
Car18g01109 CST 17 767 Subtilisin-like Serine Gene Family AT5G67360 53.6 1.8e-225 779.6
Car08g00711 . 1 781 Subtilisin-like Serine Gene Family AT5G67360 50.8 1.1e-211 733.8
Car20g00658 . 11 766 Subtilisin-like Serine Gene Family AT5G67360 51.6 2.5e-211 732.6
Car17g00619 . 17 781 Subtilisin-like Serine Gene Family AT5G67360 51.1 1.1e-206 717.2
Car07g00646 . 9 769 Subtilisin-like Serine Gene Family AT5G67360 50.6 1.8e-206 716.5
Car11g00612 . 97 563 Subtilisin-like Serine Gene Family AT5G67360 57.7 3.3e-147 519.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007662 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car16g00144 Car_Chr16 FPKM 35.956608 38.080631 52.672661 50.092808 64.673744 79.888283 62.56958 112.102478 128.007278 115.25