Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00144 ATGGCTCACACTCCTCTGAAATGGCTGTGTTTGCTGCTGGTTTTTGACTGTTTGCTTCATTCAAGCGCTCAGTTTATGAAAACTTATGTTGTTCAAATGGATAGGTCTGCAATGCCGGACTCATTTTCGGATCATCTTCAGTGGTACTCCACAGTGCTTACCAGTGTGGTCGTTAATCCTGAGAGAGAAGGCAATGGGGGAGGTGAACAGAGGATCATTTACAGTTACCAGAATGTTTTCCATGGAGTTGCAGCTCGATTGAGTGAAGATGAGGCAGAGCGGCTCGAGGAAGAAGATGGGGTCTTGGCCATTTTTCCAGAGACCAAGTACGAGCTTCACACCACCAGAAGCCCCAGATTTCTTGGGCTTGAACCAGCTGACAGCAATAGCGCCTGGTCTCAGCAAATTGCAGACCATGACGTGGTTGTTGGAGTTTTGGACACTGGGATTTGGCCGGAGAGTGAGAGCTTCAACGATGCTGGGATGTCGCCGGTGCCGGCGCATTGGAAAGGGGAATGCGAAACAGGGCGAGACTTCACGAAACAGAATTGTAACAGAAAGATCGTTGGAGCTAAAATGTTCTACCATGGGTATGAAGCTGCAACTGGGAAATTTAACGAAAAGTTGGAGTATAAATCTCCAAGGGATCAAGATGGGCATGGAACTCACACGGCAGCCACCGTCGCCGGCTCTCCGACAGCCGGCGCGAACCTCCTCGGTTATGCGTATGGGACGGCCAGAGGAATGGCGCCCGGTGCTAGAATAGCGGCTTACAAAGTCTGTTGGGCCGGCGGCTGTTTTAGCTCCGACATTTTGTCGGCTGTCGACAGAGCTGTGGCCGATGGAGTAAATGTTCTGTCCATCTCTTTGGGAGGTGGGGTCTCTTCTTACTATCGCGATAGCCTCTCCGTTGCAGCATTTGGTGCAATGGAGATGGGCGTGTTTGTGTCCTGTTCGGCCGGAAATGCAGGGCCGGACCCTGTCAGTCTCACAAACGTATCGCCATGGATAACCACTGTCGGTGCCAGCACAATGGACAGAGATTTCCCGGCCATTGTCAAGCTCGGCAATGGCAGAACAGTCACCGGCGTTTCACTTTACAAAGGAAGAACCACAATCCCAGAAAACAAACAATTCCCAGTTGTATACATGGGGAGTAACTCGAGCAACCCGGATCCGAGCTCGCTGTGTTTAGAAGGAACATTAGATCCCCATTTCGTGGCCGGAAAAATCGTGATATGCGATCGTGGAATTAGCCCACGGGTCCAGAAGGGTGTGGTGGTGAAGAATGCAGGTGGGGTTGGGATGATTCTGGCGAACACGGCGGCGAATGGGGAAGAACTTGTTGCCGATTGCCATTTGGTACCTGCCGTCGCCGTCGGTGAAAGAGAAGGTAAAGCAATTAAGGTGTACGCATTGACGAATCGAAAACCGACGGCGACTTTAGGATTTTTAGGGACAAGATTGGGGGTAAGACCGTCGCCGGTGGTGGCGGCGTTTTCATCCAGAGGACCAAATTTCCTCACACTAGAGATCCTCAAGCCCGATCTAGTGGCCCCTGGCGTTAACATCCTCGCCGCTTGGACAGGAAAAACAGGGCCGTCGAGTTTGACGACGGATACAAGAAGGGTTAAATTCAACATTCTGTCAGGAACCTCAATGTCTTGCCCACACGTCAGTGGCGTAGCAGCTCTGATCAAATCAAAGCATCCCGATTGGAGCCCGTCGGCAATCAAATCGGCACTGATGACCACCGCTTACGTCCACGACAACACCTATAAGCCTCTCAAAGACTCCTCCGGCGCATCGCCGTCAAGTCCGTACGACCACGGCGCCGGCCACATAAACCCTAGAAAAGCCCTCGATCCTGGGTTGGTTTACGAAATTCAGCCGCAAGATTACTTCGAATTCCTCTGTACGCAGGATTTAACCCCTTCACAGCTCAAAGTATTCTCCAAATACTCAAACAGATCTTGTCATCACCTCCTCCCCAACCCTGGAGACTTAAATTATCCGGCCATCTCTGCCGTTTTCCCCGAAAAAACCTCCGTCACTTCCTTGACCCTTCACAGAACCGTCACCAACGTCGGCCCTGCAACCTCCAGTTACCATGCCGTGGTGACTCCGTTCAACGGCGCCGCCGTGAAAGTTGAGCCGGAGAGTCTGAACTTCACAAGGAGATATCAGAAGCTTTCATACAAAATCACTTTCCTGACGAAGAAGAGACAGAGTATGCCGGAATTCGGAGGACTAATCTGGAAGGATGGAACTCATAGTGTGAGAATCACTTTCGCCGTCACCGTCACCGTCACCGTCACGTCCCCAAATACCAATACCGCCTCTTTAACTGGCCCTCTACATTAA 2364 51.4 MAHTPLKWLCLLLVFDCLLHSSAQFMKTYVVQMDRSAMPDSFSDHLQWYSTVLTSVVVNPEREGNGGGEQRIIYSYQNVFHGVAARLSEDEAERLEEEDGVLAIFPETKYELHTTRSPRFLGLEPADSNSAWSQQIADHDVVVGVLDTGIWPESESFNDAGMSPVPAHWKGECETGRDFTKQNCNRKIVGAKMFYHGYEAATGKFNEKLEYKSPRDQDGHGTHTAATVAGSPTAGANLLGYAYGTARGMAPGARIAAYKVCWAGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYYRDSLSVAAFGAMEMGVFVSCSAGNAGPDPVSLTNVSPWITTVGASTMDRDFPAIVKLGNGRTVTGVSLYKGRTTIPENKQFPVVYMGSNSSNPDPSSLCLEGTLDPHFVAGKIVICDRGISPRVQKGVVVKNAGGVGMILANTAANGEELVADCHLVPAVAVGEREGKAIKVYALTNRKPTATLGFLGTRLGVRPSPVVAAFSSRGPNFLTLEILKPDLVAPGVNILAAWTGKTGPSSLTTDTRRVKFNILSGTSMSCPHVSGVAALIKSKHPDWSPSAIKSALMTTAYVHDNTYKPLKDSSGASPSSPYDHGAGHINPRKALDPGLVYEIQPQDYFEFLCTQDLTPSQLKVFSKYSNRSCHHLLPNPGDLNYPAISAVFPEKTSVTSLTLHRTVTNVGPATSSYHAVVTPFNGAAVKVEPESLNFTRRYQKLSYKITFLTKKRQSMPEFGGLIWKDGTHSVRITFAVTVTVTVTSPNTNTASLTGPLH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 827976 830711 - Carg16715-RA Car16g00144 163296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00144 787 ProSitePatterns Serine proteases, subtilase family, serine active site. 551 561 IPR023828 -
Car16g00144 787 Pfam Subtilase family 139 592 IPR000209 GO:0006508|GO:0008236
Car16g00144 787 Pfam Peptidase inhibitor I9 28 113 IPR010259 -
Car16g00144 787 Pfam PA domain 380 468 IPR003137 -
Car16g00144 787 Pfam Fibronectin type-III domain 668 766 IPR041469 -
Car16g00144 787 ProSiteProfiles Serine proteases, subtilase domain profile. 109 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00692 Car-Chr10:3589429 Car16g00144 Car-Chr16:827976 0 dispersed
Car16g00144 Car-Chr16:827976 Car20g00658 Car-Chr20:3717241 0 dispersed
Car16g00144 Car-Chr16:827976 Car18g01109 Car-Chr18:11090735 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00144 - - csv:101214825 1380.54