Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car16g00191 ATGAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGGTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTTTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCAAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGTGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCGGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCGGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA 633 55.29 MNDVYGHEFTAVALPEFGYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGVSEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1093027 1093659 - Carg16762-RA Car16g00191 163343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car16g00191 210 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
Car16g00191 210 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 103 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00191 Car-Chr16:1093027 Car14g00909 Car-Chr14:5436453 4.27E-50 dispersed
Car16g00191 Car-Chr16:1093027 Car19g00787 Car-Chr19:8548602 1.76E-53 transposed
Car16g00191 Car-Chr16:1093027 Car04g01038 Car-Chr4:5949558 4.34E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4905 PF00642 zf-CCCH 4.80E-06 CL0537 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car16g00191 - - mcha:111011570 278.1