Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car16g00191 | ATGAATGACGTGTACGGTCATGAATTCACCGCCGTGGCGCTGCCGGAATTCGGTTACAGGAACACTCGCTTAACGCCACAAACCGATGACACGGCGCTTTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCAAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGTGGTGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGAACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAACTCAAGCTTCATTTTGATGCTCCCGTGGCGCGTGCGGCGCTGGCCGCACTTGAATATCCCGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCGGAGTTGGAGGCGTCGGAATTCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA | 633 | 55.29 | MNDVYGHEFTAVALPEFGYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGVSEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1093027 | 1093659 | - | Carg16762-RA | Car16g00191 | 163343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car16g00191 | 210 | ProSiteProfiles | Zinc finger C3H1-type profile. | 78 | 105 | IPR000571 | GO:0046872 | |
Car16g00191 | 210 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 83 | 103 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car16g00191 | Car-Chr16:1093027 | Car14g00909 | Car-Chr14:5436453 | 4.27E-50 | dispersed | |
Car16g00191 | Car-Chr16:1093027 | Car19g00787 | Car-Chr19:8548602 | 1.76E-53 | transposed | |
Car16g00191 | Car-Chr16:1093027 | Car04g01038 | Car-Chr4:5949558 | 4.34E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4905 | PF00642 | zf-CCCH | 4.80E-06 | CL0537 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car16g00191 | - | - | mcha:111011570 | 278.1 |